MmuEX0016948 @ mm9
Exon Skipping
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81429341-81438803:+
Coord C1 exon
chr15:81429341-81429441
Coord A exon
chr15:81431338-81431975
Coord C2 exon
chr15:81438627-81438803
Length
638 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTATTTGTTTTTAGATT
3' ss Score
11.18
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CGGTCAGGTTCTTTAAAAGAAGAAATGAAACGAATGCTTCCCCTGCCCGGCATTAATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
Seq A exon
ATTTTGGTTCACTGTTTGACCTGGAACATGACTTACCAGATGAATTAATCAACTCTACAGAATTGGGACTAACCAATGGTGGCGATATCAGTCAGCTTCAGACAAGTCTTGGCATAGTACAAGATGCAGCCTCGAAACATAAACAGCTGTCAGAACTGCTGAGGTCTGGTAGCTCCCCAAACCTCAACATGGGAGTCGGTGGCCCAGGCCAAGCGATGGCCAGCCAGGCCCAACAGAACAGCCCTGGATTAAGTTTGATAAATAGCATGGTCAAAAGCCCAATGGCACAGACAGGCTTGACTTCTCCAAACATGGGGATTGGCAGTAGTGGACCAAATCAGGGTCCTACTCAGTCCCCAGCAGGTATGATGAACAGTCCAGTGAACCAGCCTGCCATGGGAATGAACACAGGGATGAATGCTGGCATGAATCCTGGAATGTTGGCTGCAGGCAATGGACAAGGGATAATGCCCAATCAAGTCATGAACGGTTCCATTGGAGCAGGCCGGGGACGGCCAAACATGCAGTACCCAAATGCAGGCATGGGCAATGCTGGCAGTTTATTGACTGAGCCACTACAGCAGGGCTCTCCTCAGATGGGAGGACAGCCAGGATTGAGAGGCCCCCAACCACTTAAG
Seq C2 exon
ATGGGAATGATGAACAATCCCAGTCCTTATGGTTCACCATACACTCAGAATTCTGGACAGCAGATTGGAGCAAGTGGCCTTGGTCTCCAAATTCAGACAAAGACTGTTCTACCAAATAACTTATCTCCATTTGCAATGGACAAAAAGGCAGTTCCTGGTGGGGGAATGCCCAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024-'5-5,'5-4,6-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.986 C2=0.949
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGAAATGAAACGAATGCTTCCC
R:
GCATTCCCCCACCAGGAACT
Band lengths:
254-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: