GgaEX1022531 @ galGal4
Exon Skipping
Gene
ENSGALG00000011992 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr1:49672415-49693714:-
Coord C1 exon
chr1:49693621-49693714
Coord A exon
chr1:49680481-49681139
Coord C2 exon
chr1:49672415-49672591
Length
659 bp
Sequences
Splice sites
3' ss Seq
TAAAATTTCTTGTTTTTCAGATT
3' ss Score
10.11
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGGCCGAGAATGTGGTGGAGCCGGGCCCGCCTTCAGCCAAGCGGCCTAAACTCTCCTCGCCGGCGCTCTCCGTGTCCGCCAGCGACGGCACAG
Seq A exon
ATTTTGGATCACTATTTGATCTGGAACATGACTTGCCAGATGAACTGATCAGCTCCACAGAACTGGGACTCACCAATGGAGGTGACATTAATCAGCTGCAGACCAGCCTTGGCCTGGCACAAGATGCTGCCTCTAAACACAAGCAGCTGTCAGAACTTTTACGGGCTGGTAGCTCCCCAAATCTCAATATGGGGGTTGGTGGCCCTGGCCAGAGCATGGCCGGCCAAACTCCACAAAACAGTCCTGGAATGGGAATGTTAAACAGCATGGTGAAAAGCCCCATGGCACAGGCTGGGTTGACTTCTCCCAGTATGGCGATGGGTACAAGTGGACCAAATCAGGGTCCTTCAGCCCAATCTACAGCAGGAATGATGCCAACAGTAAACAGTCCAGTTAACCAGCCTGGCATGGGAATGAACACAGGGATGAATGCTGGCATGAATCCTGGGATGTTGGCAGCAGGCAATGGACAGGGGGTGATGCAGGGGCAAGTCATGAACGGTTCGATTGGAGCGGGCAGAGGGCGACCAAATATGCCATACCCAAACCCAGGAATGGGAACTGCTGGTAACTTGTTGGCTGAGACACTGCAGCAAGGCTCTCCGCAGATGGGGGGACAGGCTGGACTGAGGGGGCCGCAGCCTGGAGCCATGAACAAG
Seq C2 exon
ATGGGAATGATGAGCAATCCCAGTCCTTATGGTCAGCCATATAGTCAGAATACTGGGCAGCAGATTGGAGCCAGTGGTCTCGGACCTCAGATGCAGAATAAAACTGGACTGCAAAATAGCTTACCGCAGTTTCAAATGGACAAGAAGCCAGTTCCTGGGACAGGAATGCCTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992-'1-6,'1-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=0.991 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCGAGAATGTGGTGGAG
R:
CATGTTAGGCATTCCTGTCCCA
Band lengths:
271-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]