DreEX6068871 @ danRer10
Exon Skipping
Gene
ENSDARG00000100666 | ep300a
Description
E1A binding protein p300 a [Source:ZFIN;Acc:ZDB-GENE-080403-16]
Coordinates
chr12:18831888-18839617:-
Coord C1 exon
chr12:18839322-18839617
Coord A exon
chr12:18832796-18833415
Coord C2 exon
chr12:18831888-18832064
Length
620 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTTTTCTGCTGTAGATT
3' ss Score
10.5
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GAGGGGGTTGATACGCCGAAGCTGAAATCGAGAGGCGAACCCAGGAAAGAGGAGTATTTTGTACACGGGACTTTCCCCCCCTTCGTCCCTAAAAAGGAGGGGGAAAAGTCAAAATTTTTAAGGCGATATTTTTAAAATCGATGATTACGAATAGGCTTATGTGCCTATCTCCGAGGATATATATTTTAATTCGTTAAAAAATATGGCCGAGAACGTTCTGGACTCTGGCCCGCCTTCAGCCAAGAGGCCTAAACTCTCATCCCCGGCTCTCTCCGCCTCAGCCAGCGATGGAAACG
Seq A exon
ATTTTGGCTCTCTTTTTGACCTGGAGCATGACCTTCCAGACGAGCTGATCAGTTCCTCAGAACTGAGTCTTGCAAATGGAGGGGACCTCGGCCAGTTGCACACCAGTTTGGGTAGTGGGGGCGGAGTCATTGGAGGAGCTGTGTCCGGTGGTCAGGATGCAGCAGCCAAGCACAGGCAGCTCTCTGAGCTTCTCCGACATGGATCCACACCTGGAGCGCAGCAGCAGGGTGCGATGGGTAACCCAGGAGGAGCCTCAATGGGACTTTTTGGGAATATGAAGGTTTCTCCGGGTACCCAAAGCATGGGTCCACAAGGACAGCAACATCTTTCCATGCAGGCTGGCCTCATGCAGCAGCAGCAGATGGTGGACTATCTTAACAGGAATATGCTCGGACCACAGAAAGGAAATGGACAGCAGCAGCCAGGAGGGCCCGCACCTCAACACCAAAATGCGCTGGCGTCTCAGATGATGAATGGATCGCCCAGAATAGGACATCACAACCCGGGCATGGGTAACAGCAACAGTAACCTGTTAGCAGAGGCTCTTCAGCAGCAGCAGCAGCAGACAGTAGGAAGCCAGGGTGGACTGAGGCCACAGCAGCCTGGAGCGATAAGCAAG
Seq C2 exon
ATGGGGATAAATGCAGGTTCAGGCCCCTATGGAGGCCCGTATGGTCAGTCTGCCAGTCAGGGTCTTGGTGTTGCAGGGCTGGCCCCTCAGCTCCAGAACAAACCAGGTCTGCCTAACAGTCCCGCGCAGTTTAATCTTGACAAGAAGCCTCTGCCCATACATGGCATACCTGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100666-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=0.961 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGCCGAAGCTGAAATCGAG
R:
CAACACCAAGACCCTGACTGG
Band lengths:
358-978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]