GgaEX1022531 @ galGal3
Exon Skipping
Gene
ENSGALG00000011992 | EP300
Description
NA
Coordinates
chr1:51701448-51723184:-
Coord C1 exon
chr1:51722893-51723184
Coord A exon
chr1:51709514-51710172
Coord C2 exon
chr1:51701448-51701624
Length
659 bp
Sequences
Splice sites
3' ss Seq
TAAAATTTCTTGTTTTTCAGATT
3' ss Score
10.11
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAGAGGCCTCGCTCAGCCCCTCCGCTCCCACCTCGCCCCGCTCCTCCCAGGGGCGGAAAAAGGGGAACTCGGCCGCTCCTCGCCCCTCCGCATCGCCGCTCCGCAGCCCCCCGAGGGCCCGGCCTCAGGAGGTGGGGGTTTGGGGGCTCCCCCCGCCGTCTCTCTGCTCGGAGTGATTGTCTAAAAAAGAATTAAAAATGGCCGAGAATGTGGTGGAGCCGGGCCCGCCTTCAGCCAAGCGGCCTAAACTCTCCTCGCCGGCGCTCTCCGTGTCCGCCAGCGACGGCACAG
Seq A exon
ATTTTGGATCACTATTTGATCTGGAACATGACTTGCCAGATGAACTGATCAGCTCCACAGAACTGGGACTCACCAATGGAGGTGACATTAATCAGCTGCAGACCAGCCTTGGCCTGGCACAAGATGCTGCCTCTAAACACAAGCAGCTGTCAGAACTTTTACGGGCTGGTAGCTCCCCAAATCTCAATATGGGGGTTGGTGGCCCTGGCCAGAGCATGGCCGGCCAAACTCCACAAAACAGTCCTGGAATGGGAATGTTAAACAGCATGGTGAAAAGCCCCATGGCACAGGCTGGGTTGACTTCTCCCAGTATGGCGATGGGTACAAGTGGACCAAATCAGGGTCCTTCAGCCCAATCTACAGCAGGAATGATGCCAACAGTAAACAGTCCAGTTAACCAGCCTGGCATGGGAATGAACACAGGGATGAATGCTGGCATGAATCCTGGGATGTTGGCAGCAGGCAATGGACAGGGGGTGATGCAGGGGCAAGTCATGAACGGTTCGATTGGAGCGGGCAGAGGGCGACCAAATATGCCATACCCAAACCCAGGAATGGGAACTGCTGGTAACTTGTTGGCTGAGACACTGCAGCAAGGCTCTCCGCAGATGGGGGGACAGGCTGGACTGAGGGGGCCGCAGCCTGGAGCCATGAACAAG
Seq C2 exon
ATGGGAATGATGAGCAATCCCAGTCCTTATGGTCAGCCATATAGTCAGAATACTGGGCAGCAGATTGGAGCCAGTGGTCTCGGACCTCAGATGCAGAATAAAACTGGACTGCAAAATAGCTTACCGCAGTTTCAAATGGACAAGAAGCCAGTTCCTGGGACAGGAATGCCTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=0.991 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGGGGCGGAAAAAG
R:
TCTGCATCTGAGGTCCGAGAC
Band lengths:
345-1004
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]