DreEX6016511 @ danRer10
Exon Skipping
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24915543-24925247:-
Coord C1 exon
chr3:24923361-24925247
Coord A exon
chr3:24920443-24921023
Coord C2 exon
chr3:24915543-24915707
Length
581 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTCCTGTCTTTCAGATT
3' ss Score
12.94
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GTACACAACGCCTTTAAAAAAAAAGCAACACTTCAGTTCGCCGCCGACAATGGCGGAAAAGACGGATGCAAGCAGCGAGGATAAATCTCGGGAAAATTGCTCGGTCGCCGAGGAGGCTACGTGAGTTTGCGGCGAGCTTGCATGACCGTCTGTTCCTCCCTTCACCTCCTCCTTTCGGAAATATACTTTGAGGAGCTAAAGACTACAAATTCTTAAAAGGGAGCATTAAAGGTGGACTGAACACTCAAGCATTGCATTGCATGCATGTATCGTCCCATGAAAGGGAAACGGGAATCCGTCCGGTGTTCGTGAACGGGGAGATTTCATTCGCTCATCGGCTAGCGACTGCACAGGAAGGGCTATCCTACGCGGGATATATGCTTTAACACTAAACCGGAGGAAAACTATGGCCGATAATGTGCTGGACTCCGGTCCGCCTACAGCTAAGAGGCCTAAATTGTCTTCCCCGGCTCTGTCGGTCTCCGCAAGCGATGGAAACG
Seq A exon
ATTTTGGCTCTCTGTTTGACCTGGAGCATGACCTCCCAGATGAGCTCATTAACTCCTCCGACCTGGGCCTTCCAAACGGGATGGACCCCAGCCAGTTGCACACCAGTCTGGGTGGAGGAGGGATGTCAGGCCCTTTGGGCGTCTCGGGCCAAGACACTGCGGCCAAACACAAGCACCTGTCTGAGCTCCTCCGCCCTGGTGCTCCTCCATCCGCCTCCACGGCCACCGGCAGCCCCGGTAACGCTGCCTCCTTAGGAATGATGGGAGGTCTGAGCGGTGGCCCTGTTACTCAGGGAATGGGTGGCCCTCAGCAGCAGCCTAGCATGATGCCGCAGCCTGGCATGGTGGGGGGACTGAACCGAGCCATGATGGGCACCCAGAAAGGGAATGGACAGCCGCAGAGTATGATGGGTGGGCAGATGATGAATGGTGCACCTAGAATGGGCTACGCCAATGTGAACATGAATGCAGGCATGGCTGGCAACGGGAATATGCTGCCCGATTCTCTGCAGCAGCCAAATGCAGGGCAGCAGATGGCACAGGCAGCAATGAGACCGCAGCAACCAGGAGCAGTGAACAAG
Seq C2 exon
ATGGGGATGATGGGTGCTCCAGGCCCGTATGGCGGTTCATATGGTCAGTGCGGAGGACAGTCTCAACTTGGGCCTCAACTCCAAAACAAAGCGGGTCAACCAAACAGCATTAACCAGTTTAATATGGACAAGAAACCTCAGCTTGGGCAGAACATGGGTGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=0.990 C2=0.945
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCGTGAACGGGGAGATT
R:
TGCCCAAGCTGAGGTTTCTTG
Band lengths:
347-928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]