RnoEX0003844 @ rn6
Exon Skipping
Gene
ENSRNOG00000052194 | AABR07067728.1
Description
dynein, axonemal, heavy chain 7 [Source:NCBI gene;Acc:252893]
Coordinates
chr9:59584472-59594416:-
Coord C1 exon
chr9:59593917-59594416
Coord A exon
chr9:59588563-59588625
Coord C2 exon
chr9:59584472-59584534
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCCTCCCTACACAGGAT
3' ss Score
10.48
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
CTCGTTTGCAGGCTTCAGTCTTGAGTGCCTTCTCATTATTCTATTTGTCTACATAAGCAATGAAATCTGCAGAAACAGCTGAACGACAGCTTAAGACAGAGGACCACACCCACGCAGACTTGGTGAAAGGTGCATTAATTTGAAGACCCACTTAGTCATCGAAGGGTCTTCGCTCTTCACAGCTGCCGATCACCCTCCGCAAAGGGTGTGTGTGTCAGTGTTGAAAGCCACAGAGACCCCAGAGAGCCACCCTGCTCAACCTCTCAGAAAGTTCTGGGCCTGATCTCGCAGACACAGATGACCGGAAGTGGAATCTGCCAGCTTGTTGCTTAGCAACGAATGAACTAGGGACGCTAAAGCTCCCAGCTCAAGAGAGAGAGGTGACTGAGCGAGCTGTCCTGCTGCGAACAACTCTGGTCTCCAGGTCCTAGGTCCAGCAGCAGCGATCCCGGCCAGCCCTGCGTGGCCCGCAGGTCCTTGCCGCCATGAGCAGCGAGCAG
Seq A exon
GATAAACTATCCACTAAAGAAAAATCTAAGACACCAGTGAGATTCCTACCACAGTTGGCTATG
Seq C2 exon
GACAAACCATCCAGTAAAGAAAAGGCCAAGACGCCGACAAGAGCTTTACCACAGTTAACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052194_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGAACAACTCTGGTCTCC
R:
GTAAAGCTCTTGTCGGCGTCT
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]