HsaEX6017545 @ hg38
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:196051187-196068812:-
Coord C1 exon
chr2:196068697-196068812
Coord A exon
chr2:196058054-196058116
Coord C2 exon
chr2:196051187-196051249
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTCATGTTTTTCATACAGGAT
3' ss Score
10.6
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
GAGACCGCTGCAAGTCCCGGGGCCCTGCCTCTATCGTCCTAGGGGTTCCGCGGGCAGGAGCAACCCAGAAGCACCGGTGAGGCCAGCGCGTCCTCGCAGCCATGAGCAGTGAGCAG
Seq A exon
GATAAATCGGCCAGCAAAGAAAAATCCAAGAAACCAGTAAGATTTCTACCACAGCTGTCTATG
Seq C2 exon
GAGAAATTAGCCAGCAAAGAAAAGTTCAAGGCACCAGCAAGAGCTTTACCACAGCTGTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'0-3,'0-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.915
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTCTATCGTCCTAGGGG
R:
CTCTTGCTGGTGCCTTGAACT
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains