MmuEX7000172 @ mm10
Exon Skipping
Gene
ENSMUSG00000096141 | Dnah7a
Description
dynein, axonemal, heavy chain 7A [Source:MGI Symbol;Acc:MGI:2685838]
Coordinates
chr1:53698632-53706761:-
Coord C1 exon
chr1:53706678-53706761
Coord A exon
chr1:53702018-53702080
Coord C2 exon
chr1:53698632-53698694
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTCCTCCCTACACAGGAT
3' ss Score
9.95
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
CTCCTCTCCAGGTCCTGAGTTCCGCAGCAGCGATCCCGGCCGGCGTTGCCTGGCCCGCAAGTCGACGCCATGAGCAGCAAGAAG
Seq A exon
GATAAGCTATCCACTAAAGGCAAATCAAAGACGCCAGTGAGATTCCTACCACAGTTGCCTATG
Seq C2 exon
GATAAACTATCCAGCAAAGAAAAGGTCAAGCTGCCGACAACAGTCTTACCACAGTTATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096141-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000094964fB8912
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCAGGTCCTGAGTTCC
R:
AGATAACTGTGGTAAGACTGTTGT
Band lengths:
142-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types