RnoEX0004525 @ rn6
Exon Skipping
Gene
ENSRNOG00000056767 | AC136588.3
Description
NA
Coordinates
chr14:85823052-85834019:+
Coord C1 exon
chr14:85823052-85823189
Coord A exon
chr14:85830434-85830506
Coord C2 exon
chr14:85833940-85834019
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTGTAGTTTTTACTCTGCAGGCT
3' ss Score
6.84
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTCCGCCCTCATACATGCTGTGAGAATTCAGTCCAAAAACATGATCAGCCTTCTTCTCCAGCAAGGTGCTGACCCATCTTTGGTGGACATCTATGGAGCCACTGCACAAAGCTATGCTGTTTTTGAAACCTTTCAAGT
Seq A exon
GCTTTCCCAAAGCCCCGGTCCCAGTTGTCCTGAGCTTACAACAAAAGAGGACAAACAGAGTTTTGACACTAAG
Seq C2 exon
GATGGCTGCATACCACATTCACACCACATCAAGGAAGACAACCAAGAGATGGAGGAAAACACAGATGACAAGCTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056767_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.733 C2=1.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(90.9=63.8)
A:
PF127962=Ank_2=PD(3.4=8.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTCTTCTCCAGCAAGG
R:
CTCCCCAGCTTGTCATCTGTG
Band lengths:
173-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]