MmuEX0005123 @ mm10
Exon Skipping
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5575639-5584283:+
Coord C1 exon
chr11:5575639-5575776
Coord A exon
chr11:5578584-5578653
Coord C2 exon
chr11:5583958-5584283
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTGTAGTTTTTCCTCTGCAGGCT
3' ss Score
8.77
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTCCGCCCTTATACATGCTGTGAGAACTCAGTCTAAAAACATGATCAGCCTTCTTCTCCAGCAAGGCGCCAATGCATCTTTGGTGGACATCTATGGAGCTACTGCACAAAGTTACGCTGTTTTTGAAACCTTTCAAGT
Seq A exon
GCTTTCCCAAGGCCCTGGTCCCAGACCTGAGCTAACAACAAAAGAGGCCAGACACAGTTTTGATACCAAG
Seq C2 exon
GATGGCCTTGTACCATGTTCACCCCGCTTCAAGGAAGACAACAAAAGGATGGAGGAAAACACAGATGCAGTTGACGAGCTGGGGAGGTACAACTAGCTGCTTGTACATTCCTTTAGTTAAAACAAGCTGGGGTGGGGTGTTATGGGATGGCTACAGTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAGTTACTGAAAGCCACGCCACCAACGCATGAGTTAACTGTAACAGCAATTACTCAGAGTGGGAAAAACAACTGCGTATGATGTTTTGTGTTCCCCTTTAAACCTGCCTGATATTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481_MULTIEX3-3/4=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.735 C2=0.904
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(90.9=63.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTCTTCTCCAGCAAGG
R:
AGCTCGTCAACTGCATCTGTG
Band lengths:
173-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types