MmuEX0005123 @ mm9
Exon Skipping
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5475642-5484046:+
Coord C1 exon
chr11:5475642-5475779
Coord A exon
chr11:5478587-5478656
Coord C2 exon
chr11:5483961-5484046
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTGTAGTTTTTCCTCTGCAGGCT
3' ss Score
8.77
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTCCGCCCTTATACATGCTGTGAGAACTCAGTCTAAAAACATGATCAGCCTTCTTCTCCAGCAAGGCGCCAATGCATCTTTGGTGGACATCTATGGAGCTACTGCACAAAGTTACGCTGTTTTTGAAACCTTTCAAGT
Seq A exon
GCTTTCCCAAGGCCCTGGTCCCAGACCTGAGCTAACAACAAAAGAGGCCAGACACAGTTTTGATACCAAG
Seq C2 exon
GATGGCCTTGTACCATGTTCACCCCGCTTCAAGGAAGACAACAAAAGGATGGAGGAAAACACAGATGCAGTTGACGAGCTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.708 C2=0.883
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(90.9=63.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTCTTCTCCAGCAAGG
R:
AGCTCGTCAACTGCATCTGTG
Band lengths:
173-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types