MmuEX0005120 @ mm9
Exon Skipping
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5474230-5478656:+
Coord C1 exon
chr11:5474230-5474336
Coord A exon
chr11:5475642-5475779
Coord C2 exon
chr11:5478587-5478656
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTTCCATTTGCTCTTTTAGGTC
3' ss Score
12.36
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AACGGCTACACGCCGCTTATACTTGCGGTGCTAGAAAACAAACAGGAGATGGTGGAACTCTTACTGCAGGCTGCAGCCAACATAAACGCCCTGGATAACTGCAAGAG
Seq A exon
GTCCGCCCTTATACATGCTGTGAGAACTCAGTCTAAAAACATGATCAGCCTTCTTCTCCAGCAAGGCGCCAATGCATCTTTGGTGGACATCTATGGAGCTACTGCACAAAGTTACGCTGTTTTTGAAACCTTTCAAGT
Seq C2 exon
GCTTTCCCAAGGCCCTGGTCCCAGACCTGAGCTAACAACAAAAGAGGCCAGACACAGTTTTGATACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481-'3-6,'3-4,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.708
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=91.7),PF0002325=Ank=PU(6.1=5.6)
A:
PF0002325=Ank=PD(90.9=63.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACGCCGCTTATACTTGC
R:
TGGTATCAAAACTGTGTCTGGCC
Band lengths:
170-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types