MmuEX0005120 @ mm10
Exon Skipping
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5571286-5584283:+
Coord C1 exon
chr11:5571286-5571459
Coord A exon
chr11:5575639-5575776
Coord C2 exon
chr11:5583958-5584283
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTTCCATTTGCTCTTTTAGGTC
3' ss Score
12.36
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GCCACACAGCGCCAGCACGAGATCTGTGTGAAGATTCTTCTAGAGAACGGCGCCGACTCCAACGCCGTCGATATCCATCAGAACACCTCCCTCCACTACACGGTCTACAACAAGGACACCACCATAGCCGCCAAGCTTCTGGCATTCAATGCAGACACCGAAGTTAAGACAAAG
Seq A exon
GTCCGCCCTTATACATGCTGTGAGAACTCAGTCTAAAAACATGATCAGCCTTCTTCTCCAGCAAGGCGCCAATGCATCTTTGGTGGACATCTATGGAGCTACTGCACAAAGTTACGCTGTTTTTGAAACCTTTCAAGT
Seq C2 exon
GATGGCCTTGTACCATGTTCACCCCGCTTCAAGGAAGACAACAAAAGGATGGAGGAAAACACAGATGCAGTTGACGAGCTGGGGAGGTACAACTAGCTGCTTGTACATTCCTTTAGTTAAAACAAGCTGGGGTGGGGTGTTATGGGATGGCTACAGTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAGTTACTGAAAGCCACGCCACCAACGCATGAGTTAACTGTAACAGCAATTACTCAGAGTGGGAAAAACAACTGCGTATGATGTTTTGTGTTCCCCTTTAAACCTGCCTGATATTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481_MULTIEX3-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.904
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.9=63.8)
A:
PF0002325=Ank=PD(90.9=63.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCAACGCCGTCGATATC
R:
CCCCACCCCAGCTTGTTTTAA
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types