RnoEX0004524 @ rn6
Exon Skipping
Gene
ENSRNOG00000056767 | AC136588.3
Description
NA
Coordinates
chr14:85814824-85830506:+
Coord C1 exon
chr14:85814824-85815246
Coord A exon
chr14:85823052-85823189
Coord C2 exon
chr14:85830434-85830506
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTTCCATTTGGTCTTTTAGGTC
3' ss Score
11.24
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TAAGAGGTGGAGGGATGCTAAACCTTGGGGCTCTTCTGTGGGCGCATCCTGGCGGGATTCCGAGACTTGGTTTTCTCTACACTGGGACTGGCTGGCAGTGGCTAAAACTGGGACCTAAAAGAACTGTGTTACTGTGAGCATTGAGGTGGTTATTGAGAGGAAGTAAGGCACTGTAAACACTGAGTTCTGGAGGGGTAGAGATAGGGACACAGTCTGAGCCATGAAGAGGATCTTCAAGGGTCATTCGCCCTGGGGCTTCCTGAGCTTTAGGCATGCCGAGAACCAAGAACCTCCCAGGTACCTCACTGGGTACACGCCTGTGAAAAGGATCCACAAAGCTGCAAGCATGGGCGACATACCCCAAGTGCAGAAATTGCTTGAATTTGGGAATATTGACGTGAACATTACAGACCGGAAGAAAAG
Seq A exon
GTCCGCCCTCATACATGCTGTGAGAATTCAGTCCAAAAACATGATCAGCCTTCTTCTCCAGCAAGGTGCTGACCCATCTTTGGTGGACATCTATGGAGCCACTGCACAAAGCTATGCTGTTTTTGAAACCTTTCAAGT
Seq C2 exon
GCTTTCCCAAAGCCCCGGTCCCAGTTGTCCTGAGCTTACAACAAAAGAGGACAAACAGAGTTTTGACACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056767_MULTIEX1-4/5=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.733
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=45.6)
A:
PF0002325=Ank=PD(90.9=63.8)
C2:
PF127962=Ank_2=PD(3.4=8.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGGACACAGTCTGAGCCAT
R:
GACCGGGGCTTTGGGAAAG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]