RnoEX0004778 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190153168-190165165:+
Coord C1 exon
chr1:190153168-190153341
Coord A exon
chr1:190162729-190162907
Coord C2 exon
chr1:190165040-190165165
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTTTCCATCCTCAGACA
3' ss Score
11.43
5' ss Seq
TCGGTAAAT
5' ss Score
6.8
Exon sequences
Seq C1 exon
GATTATCAACCATCATATCCAACTCCACCCAAACTTTCCTGCTCAGTTCGCTGCTGTTCTTTCCCACGTACAACCTTGGGAAGTGCATCAGTGAGTACACTGTTATTTACCAGAGGAAAATACTATGCATCCAGCAAAAGAATGTTCTCAAATACCTGAATTGTAGCAAGGAAT
Seq A exon
ACACCAAGAAGAACATTTATTCTTTGAAGAAGCCTATGATTGGAAAGTATTTAATTGCCATGAGCATCGCTGGCTTTGTTTACCTTCTCTTCATTTTCTTTTGGGAAAATATCTCATGGAAATTAAGGATGCTCATCCACCAACACATTTACTTTGGTGTCTGCAAGAAATACAAGTCG
Seq C2 exon
GATATAATTTCCAATGAATTATCTGGGACTTCTGAAGATAATGATGTAGAAAACGAGAGAAGAGAGATCCTGTACCAGCCTGAAAAGTTCCTGAATTGCCCAGTTCTCATTAAGCAGCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505-'27-28,'27-27,29-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.9=100)
A:
PF126982=ABC2_membrane_3=PD(8.5=55.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGTTCTTTCCCACGTA
R:
AGCTGCTTAATGAGAACTGGGC
Band lengths:
244-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]