RnoEX0004794 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190221845-190224435:+
Coord C1 exon
chr1:190221845-190222104
Coord A exon
chr1:190223295-190223411
Coord C2 exon
chr1:190224318-190224435
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTGACTGTCCTATAGGAG
3' ss Score
7.92
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGTACATCAAGGAGGGATTCCTGGCAGTGCAGCATGCCGTGGACAAGAGCATCATGCTGTATCATGAAAGCCGTGCTGGGAAAGAGCTCTTTGAAAACATTGACACTCTGGTACAGAGGTTTCCATACCCAAGTCATCCCCAGGACAAACTACTTTGGATCTCCAGTCCCTTCATCCCACTAATGTTCATACTCATGTTCTCTTCCATCGTTCTTTCCATCATGCGATCCATTGTGTTTGAAAAGGAGAAAAGGTTAAAG
Seq A exon
GAGTACCAGCTCATAATGGGGCTTAGAAATTGGATCATCTGGATGGGCTATTTCTTCACGTTCTTCCCTTTATATGTCGCCATTATCTTTTTGATATGTATATTACTCTTTATCCAG
Seq C2 exon
ATCGTGGAGGAGCCAATCTTGCGCTACAGCGACTGCAGCTTCATCTTCGTCTTCCTTACATGCTATGCCATTGCATCCATATGCTTTGCCTTTATGGTTAGCACGTTCTTCAGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.9=100)
A:
PF126982=ABC2_membrane_3=FE(8.3=100)
C2:
PF126982=ABC2_membrane_3=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCATGAAAGCCGTGCTGGG
R:
ACGAAGATGAAGCTGCAGTCG
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]