RnoEX0004813 @ rn6
Exon Skipping
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13653897-13656102:-
Coord C1 exon
chr10:13655982-13656102
Coord A exon
chr10:13654840-13654902
Coord C2 exon
chr10:13653897-13654055
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATGCCCTCTTCTATCTCTAGGGA
3' ss Score
10.98
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
CAGCCGCCACAGCAGCCACGCCCACAAGAACGTGTGTCTAACCGGAGATCCAAGCGAAAGCAGTCACAGCTGCCCTGGGCAGAGCACGAGGGCGGACGAACAACTCAGTCACATTCCCTCT
Seq A exon
GGAATACCTGCATGCGGGCAAAACACTCCTGCACCTAAGATTAAGAAACATCATTTTATGTGT
Seq C2 exon
ACCTTGGCTACACAGAGCTCTCAGACACCTTGGATCATATTTTCCTAATATTTCCTGGACATTGCCTGGGAATGGCCTTCTCCAACTTGTACTACAACTTTGAGATAAAAAAGTTTTGCAATGCTAAGAACTTGAGTGACATTGACTGCAATGATGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656-'35-36,'35-35,36-36
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF126982=ABC2_membrane_3=PD(1.6=38.5)
C2:
PF126982=ABC2_membrane_3=FE(13.2=100)
Main Inclusion Isoform:
ENSRNOT00000060818fB301
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACAAGAACGTGTGTCTA
R:
AGGTGTCTGAGAGCTCTGTGT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]