RnoINT0010159 @ rn6
Intron Retention
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13653897-13656371:-
Coord C1 exon
chr10:13656152-13656371
Coord A exon
chr10:13654056-13656151
Coord C2 exon
chr10:13653897-13654055
Length
2096 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GCTTCCTATTCTCATTGCAGACC
3' ss Score
9.45
Exon sequences
Seq C1 exon
TTGGTGTTTTTTTGGTACAAGGAAGAAGCTTTTGCACACCCCCAGAGCATCCCGGCGGTGGTCTTGATAATGATGCTGTACGGCTGGGCTATCATCCCTTTGGTCTACACAGTCAGTTTCTCTTTTAAAACCCCTGGTAGCGGGTGCGTGAAGCTCGTGGCAATGCTCACCTTCCTGAGCATCAGCCCTGTGGTCCTCGTCACTGTCACAAGTGAGAAAG
Seq A exon
GTAGGAGATCACACCCACGCTTTGCCTAAAGCAGGGATCTCCCCTCCAGCAGCCGCCACAGCAGCCACGCCCACAAGAACGTGTGTCTAACCGGAGATCCAAGCGAAAGCAGTCACAGCTGCCCTGGGCAGAGCACGAGGGCGGACGAACAACTCAGTCACATTCCCTCTGTAGGTTACCGATCAGCTGTAAAAGGGGACAACGCTGAGTGGGAGAGTTTGCTGTCCTGAGTGAAGTCCATGAACAGACAAAATGAATCTCAGAGACAAAATCAGAACAAGGGTTGCCTCGGAGCATGGGGGAGCGGTGCAGGGCGGGGGGGGGGGGGTGTCGACAGGGCTGACGGAAAGAACACACTAGCAAGCTTTGGGGGATGAAGAGATGTTCTTGATCTTGAACCCGGCACTAGTTTATGTGGAAATACATACTCACGAGTCATTGTCCACCCTCGATCCATGCATTTCACTAAAATGATACGTCCCTTCCTTTAAACTAAAATCCCCGTGCTTATGCTGCCAACATGCGTCAGGGTTGGACGAAAGGGCCAATTCGTTACCTCCGTTTTTTATTAAGATTTATTATATCGTTGTGTGCTTGTGTCTGTGTTTTTCTGTGTGTCTGCACACCTACGTGGGGTGGAGGACTGAAGAGGGTATCAGGCCCCCGAGAGCTGTAGGGACAGGACAAGTGGTCTGTGAGCTGTCTGACCTGGGTGCTGGGACCCAAACTCCAGTCCTCTGTAAGAGCAGAAGGCCCTTCACTGCCTAGTGTCTCTTCTGCCCCACGATGCCTTCACATGGACTTCCCTTCCCTCCCACGTTCTTCTTTATTTTTAAAAGTAATTTTCATCTGGGGGCGGGGCTTAGTGAAATGGGTCAGCAGTGAAGAGCACAGGCTACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTCGGATCTGGGGACAGAACCCAGGGCCTTGCGCTTCCCAGGCAAGCGCTCTACCCCTGAGCTAAATCCCCAACCCCCACAGGCTACTCTTTAAGAGGACCCAGTTTTGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAACCGCAAGGTCCTGGGTTCGGTCCCCAGCTCCGGGGGGAAAAAAAAAAAAGAAAAGAAAAAAAAAAAAAAGAGGACCCAGTTTTACTCCCAGCACCCCCATGGTGGCTCACAAATGTCTGTAGCTCCAGTCCCAGGGGGTCTAATGCCCTCTTCTATCTCTAGGGAATACCTGCATGCGGGCAAAACACTCCTGCACCTAAGATTAAGAAACATCATTTTATGTGTGTAAGTGTTTGCATGAATGCCTGTGTGTAGGTCACTTACATGCCTGGTAGCCACAGAGGCCAGAAAGGGGTGTCAGGTTCCCTGGAACTGGAGTCAGAGTGCTATGAGCTGCCACATGGGTGCTGAGAATTGAACTCAGGTCCTCTGGAAGAACAGCCCCAGGCAGCCTCCTTACTTGTATTTAAATTTTGATTTACAATTTCTTTTCTTTTCTTTGGGGACTTGTCCTAGTTGTCCTCTCATCTAAGGGACCCTTCATGACAGTTTAGTCTCCATAAACCATGGAGGAAGGGACCTTATACTCCTTGTCTGACTTCAAGATGGCACTCTGGAGCCGGGGATATGGTGGAATGCTGGCCTAGCGTGTGTGAGTCCCTAGGTTCAGTCTTCAGTACAGGGAAAGTAAACACCCTGGGAAGTCCAGAGCTGGGTCCTATCCCTGCTTGGTCAGGCTCAGCTCACCTCCAACCCACACCCCTCCCCTCTGCCTTCCCATTCTGCTCACACAGCCCCAGGAGCCATGCCGTCTCTGACTTTCTCAGACACGGGGTGCTCTCTAGATTCTGGAAGTGACAGATCGAAGGAACTAAGCAAAGAAACGTTCTCACTGCTTAGAGTTTGAATGAACAGAGGGAGGGAGAGTCAACACCAGGAGTCAGGGAACCCATGTTTGGTCTGGAGGCCTGAGAGTAGACGACTGGAGTCCAGAAGTGACTGAGGAGAGGGGTGACATGGCCTCTCGCCTTTGTGCTAGTGAAATGAGTGCTTCCTATTCTCATTGCAG
Seq C2 exon
ACCTTGGCTACACAGAGCTCTCAGACACCTTGGATCATATTTTCCTAATATTTCCTGGACATTGCCTGGGAATGGCCTTCTCCAACTTGTACTACAACTTTGAGATAAAAAAGTTTTGCAATGCTAAGAACTTGAGTGACATTGACTGCAATGATGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656:ENSRNOT00000060818:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.1=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]