BtaINT0006685 @ bosTau6
Intron Retention
Description
uncharacterized protein LOC777692 [Source:RefSeq peptide;Acc:NP_001071620]
Coordinates
chr25:1922377-1925953:+
Coord C1 exon
chr25:1922377-1922596
Coord A exon
chr25:1922597-1925798
Coord C2 exon
chr25:1925799-1925953
Length
3202 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATTTTCTGTTCCCCTCACAGACC
3' ss Score
12.13
Exon sequences
Seq C1 exon
GTGGTATTTCTATACTACGATGAGGAGGCTTTTACACACAAGGAGAATGTCCGAGCTGTCTTCTTGATGCTGATGCTCTATGCCTGGGCCATCATCCCCTTCATCTACCTGACCAGCTTCTGCTTTGAGAATGCGGGGAACGCCTGTGTCAAACTCATCATCATGCTGACCTTTCTGAGCATTGGCCCCTTTGTTCTTGTCTCGGTCACAAGTGAAAAAG
Seq A exon
GTGAGGCCTATCAGGTCTACACATCACACAGCTTTAACCCTCCCTCTGGCAGCCACACAAGTCGTGCCTGTGAGAGCACGTGTCTGCAGGGGCCTGCGTGAGGCTCTTCTCATCAGTGGTCGTTGGAAGAGCCCCAAACCATCAGCGTTGCAGACATGCACCTCCCGGGGGGCGTACACTCAGCACGGGCTGCGGTGCGCACAGATGGCATAACCGGGTGCTGCCTGGACGAGGCAGCCCTGAGCTCGGAGCTGGGGGTCCACTGAACAGAGACCAGAGGGGACCTGGAGCAATGGGGACAGCCGTATCATGACTGAGATGTTGATTACATGGGCAAAAATACTTGTCAGAATCACCGAACTGTCCGCTGGTGATCACGCACTTCACTGAAACAGACTGCCCCTCAGTTTGAGAGAAGGTAATGAGAGACTTCTGTAGAATTCCATGAAGAAGAAAAACTGGGAACAAGAAAGATCTGATTGCCAAAATAAGAATTTAGCAGAGGGGTTGGAAAATAAAGGCAATGAATTTTCCAGAAAGTAGAACAAAAAGTTAAGAGAAACAGAGAAGTTGAGAGAAAAGGCAGGTAATGTGACAGTAAATGCAGGAGATGCTATCTGTATTCAATCAATGAGCCTTCCAGAAAGAGAAAACAGGAAATCAGGTTGAGGAAACGACCCAAGAAACAAAAGAAAATTTCCCAGAGTTGAAAAAACCAGACTTCAAGATTGAAAGGGTTTATCAAATGTCCAACACTGAATGAAGAGAGACCCAAACACTTCCTGAAAGACAAGCGTTTCTGAACTGAGTTCTGTCGTCAGGCAGATGGGGGGACAGAGCAGAGACAACTTCAGGTGGGCAACAACAAGTGAACCCGTACCCCACTTTCTTGGAGAGCTAGTCAGGGATCTCGGCCAACAAAGTGCAGAAGTAAAGCGAAGGAGGAAGAAAGCACAAGAGCCAGAAGAGGATGGATCCCACCTCGGAGTGTGGCAGAGGAGATTCCGCAGTCGGATGACTAGGTAGGGGTGGTTTGTGGCCTCTCCTCCGTCCTCAGCCAGTGCTGGAGTAGGACCCGCAGAGAAGGAAGGAAGGAAGGCGAATAAGCAGGAGCTGTGAATACCTGTCCCTGTGATCACATGTGGGATTGTCAAGCACTCCTCTCCTGGGTGTCGGAAGATGGTCACTGACCCGGGAGGGTCTGGGAGCCGCTGTGGCTGGCTGTTCACCCCAGGCAGGGCTGTCAAGACTGCCTTGTGGTTAAGTCTGTCTCTGTCCCACCCAGGAGCCACAGAGCTGAGTTCGGGCAGTTTCCCCGCTCCCCTCTACTTCAGTCTCCAGGGTAGATTTCCACATTTAGACTTCTACAGAGACAGCGTTAAGAGGACACGAGCCACTGTGCCTCTTCCCCAGGGCCATACCTGCCCCCTCTGCAACTACCCACCGGGGCCTGGTCTCCGCAGGTGCAACTGTCTGATCACCAGAGCCATGACCCTGATGCCTCAGCCACAATGTGGAGCCACGACTTCTGAGCTGTGCCCCCAAACGGTGCTTCCGTCCCCACAGGTGGACCCTGGCTCTGCTGCTCTGAGTCCTGGCCCAGGAAATGTTGGTCTGGAGACCTCACATCCAAGTTCAACTCCCTGTACGTCGCAGTGGCCTCCACTGACAGGAATTTCATAAATTGATCCCCCAAAGCTGTACTACTCTAAATCCAAGCCCTGAGAGTAGAGTCTGTTTTCATATGAGGAGTCTGTTCAGCCTCTCTTCAGGGAGTCTGAGGAAAGTCACATGTCCCCGGGCTGTCTTCCTTGCAGGCCCCCCTGATTTGGAGCGGGTGGTGTATCAAATCATGAAGCCTGAAATGAAAGCTCTAATCCCACCTCCTTGTTGGTGGAGATGGGTTGTGGTTTGTGCAGGGTGGCAGCTGGTGGCACATGGAGTGGCCTGGGGTTAACACCAAACAGCCTGTGGGGTGGGAGAGGGCTGTAAGCGCAGCCCCATTGCAAGTCCGTTCCCACGCAGCACACTGAGCTCATCTTCTTACAGATTAATTTGCTTATGAGTAGCATAGTTATTTCGCAGAGCAGTTGTGTTTATTTGTTGTAAATATTTAAAGTATTTTAAATATACCAAAGGTTATATATAACCTTGTTTGTTATTTCTTCACTTTCCAATATAACATAAAAAATAGGCTTCTGTAAACTCTTAAGAGTCCCCAGTTTCTGTATTTGTTTTAGGACCAGACAACTTACTGACCTCTCCTTTATTTCTTTTTTCTAATTGAAGTATAGTTGTTTTACAATGTTGTGTTAAGTTTTGCTGTACAGCAAAGTGACTTAATGATTTACACATATATGCATCTTTGCCATCATGGTTTCTCACGGGATATCGGCTGCAGGGCCCTGTTGTGTGCAGCAGGGCCTTGGTGCTCATGCGTCCTGTGCATAATAGTGCGCATCCACCGAGCCCGGCTTGCTGCCCCGCCCCACCCCTGCGGGACCTTGAGTCTGTTTTCTTTTCTTGTTTCTTTTTGCCACAAAGCTTGTGGGATCTTAGTTCCCAACCAGGGATGGAACCCATGCCCCTTGCATTGGAAGCACAGAGTTCTAACCACAGGACCACTTTGGTTGATTCTTGTGGCTTTTCTAGGTATGTGATAATGTACAGCATCTGCAAATAATGGTGGTTTTGACTCCACAAACTCTCCACACAGCAACTGTGTTCTCCTTATCTACTTGTAAGATGACACTCTAATAAATCCAAAGCTGGTGCCCCAGGCTTTCCTGTCTGGCCCTAACTCATTTGTAAGCCTCCAGCCTTCAAAGCCACGACTTCCACAAGTGCATCCTCTACTGCAGCCATACCGTGCTGGTTTTCTCAAACACACCAAGCTCTTTCTGACTTGTCCGCATAAACAGTTGGAATAGAAGTAAAATGACTTCAGGAAGTACTGCAAAAGAAAAATAGTTACAGCTTAGAGGCTGGGTGACTGCCTCAGAAGAGGGAACACTGGGAGTCAGGGAGAACCTGATTTCTGGTCTTGGGCCTGGGAGTGTTTTGAGCAGAGACAGATACAGCCACAGGTAGAAAGAACAAGCCCTTTATAGAGGAGAAGAGGCCCAGTGGGCCTAGAGAGTCGCTGGGGGATGTACCCACTTCTTCCTGAAAGAAGGGTTAATATTTTCTGTTCCCCTCACAG
Seq C2 exon
ACCTTGGCTACACAGAGATCTCAGAGTCCCTGGATAACACGTTCCTACTGCTTCCAGGCCATTGCCTAGGGATGGCTTTAGCCAACCTGTACTACAACTTTGAACTGCAGAAGTTTTGCAAGGTCAAGAGCTTGGACCAGATTGAGTGCAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034643:ENSBTAT00000037495:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.2=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]