MmuINT0007771 @ mm9
Intron Retention
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24422561-24424894:-
Coord C1 exon
chr17:24424675-24424894
Coord A exon
chr17:24422720-24424674
Coord C2 exon
chr17:24422561-24422719
Length
1955 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
GCTTTCTGTTCTCATTGCAGATC
3' ss Score
11.93
Exon sequences
Seq C1 exon
TTGGTGTTTCTGTGGTATAAGGAAGAGGCTTTTGCACACCACGAGAGCATCCCAGCGGTGGTCTTGATAATGATGCTCTACGGCTGGGCTGTCATCCCTTTGGTGTACACGGTCAGCTTCTCCTTTAACACTCCTGGCAGTGCATGTGTGAAGCTCGTGGTGATGCTCACCTTCCTGAGCATCAGCCCTGTGGTCCTCGTCACCGTCACCAGTGAGAAAG
Seq A exon
GTAATCACATTGACATTTTGCAGGGAGCAGGAATCTCTCCTCCAGCAGCCACTACAGCTGTCACACCCACAAAAACTCATGTCTAACCAAAGACGCAAGAGATAGCGCTCGCAGCCGCTGTGGGCCGAACACAGGGTGGACAAACAACTCAGTCACACTCACTCTGCAGATGGATGCTTCACCTGTGTGAAGTCTATGAACAGACAAAATGAATCTCGGAAATGGACTCAGAAAAAGGGTTACCTCTGGGCCTGGGGCAAAGGGCCGATAGAAATAACACACCGGAGAGCTTTGGGGGGTAAAGGATGTTCCTGATCTTGGACCGGACACTAGTTTATGTGGATTTACATACTTACGAATCACTGTCCACCTGTGATCCATGCATTTCACTAAAATGTAATGTTCCTTACTTTAAAAAAAAAAGTGAATATGTAAATGAATTAGTCAACATGGGAGGAAGAGCTCTTGTAAAAGAAACTAAGATCCAGCCATTATTTACAACACATACTTGAAACTGACAGCTTCTGTTTATGCTACCACAAATGGGTCAGGGTGGGACAAAAGAGCCTAAATGTTACCTCCACTTTTTTTTTTCTTTTTTTCTTTTTTTTCTTTTTTTTACCTCCACTTTTTATTAGGATTTATTATATGACTGTCTGTACGTCTCTGTGTTTTCCTGTGTGTCTGTGCACATATGTGGAGTTTCACATGGAGGACTGAAGAGGTTATCAGATCCCCAGGAGCTGTGGGGACCAGTGGTTTGTGAGCGACATGGCATGGTTGCTGGGAACTAAACTCCAGTCCTCCATAAGAGCAGAAGGCTCCTCACTGCCGGGCATGTCCTGGCCCCACAATGCTCTTTTTCTTTTGGATTTACATTTCACAACCCCTTCAGATGGATTTTCCTTCCCTTCCACATTCTTCTTTATTTTTAAAAGTAATTTTTATTTTGAAGGCGGGGCTTGGTGAGCTGGGTCAGGAGTTAAGACCACTCACTGGCTGCTCTTCAAGAGGACCCAGTTTTATTCCCAGCACCCAACAGCTCACGGATGTCTGTGACTCCCATCCCAGGGGATCGAATGCCCTCTTCTAGCCTCCAGGATGTACAAACATACAACAGACAGCATACAGGCAAAACATTCATATACATAAGATTAAGAAACATTGCTTTGTGTATAAGTGTTTGCATGAATATCTGATGCACATCACTTACATGCCTGGTAGCCACCGAGGCCAGAAAGGGGTAAAGGGGTGTCAGGTTCCCTGGAACCGGAATTAGACTGCAGTGAGCCACCATGTGGTTGCTGAGACTTGAACCCAGGTCCTCTGGAGAGCAACCAGTGTTCTTAACCACTGAGCCATCTCCCCAGCCATCTTCCTTACTTTCATTTAAAATTTGATTTACAATGTCCCTTTTCTCTGATGTGGGGAGTTGTCCTCTCTCCTAAGGGACCCTTTATGACAGTTTAAGTCTCCACAAACCATGGAGGAAGGGACCTTATACTCCTTGTCTGACTTCAGGATGACGCTCTGGAGCCAGGGATATGGTGGAATGCTCGCCTAGCATGTGCGAGTCCCTAGGCTCAATCTTCAGGACAGGGGAAGGTAAAACACCCCAGGGAGTCCAGAGCTGGCTCCCATCCCTGTTCTGCCTGGGTCTGCTCACCTCCAGCCCACACCCCTGGGCACTTCCTGCTGGAGCCATGCTGCCTCTGACTTTCTCAGATACAGTGTGCTCTCTGGATAAAGGAAGTGGCAGATCTAAGGAACTAAACAAAGAAACATAGAGTTAAATGAACAGAGGTGGGGAGAGTCAACACCAGGAGTCAGGAACCCACAGTGTGGTCTGGAGGCCTGAGAGTGTGACGTCCGGACTCCAGAAGTGACTGAGGAGAGAGATGACTGGTCACTTTCCCTTATGCTAGTAAAATTGGTGCTTTCTGTTCTCATTGCAG
Seq C2 exon
ATCTTGGCTACACGGAACTCTCAGACTCCTTGGATCATATTTTCCTAATTCTTCCTGGACATTGCCTGGGAATGGCCTTGTCCAACTTGTACTATAACTTTGAGCTGAAAAAGTTTTGCAGTGCTAAGAACTTGAGTGATATTGACTGCAATGATGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-Abca17:NM_001031621:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.1=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGCACACCACGAGAGCAT
R:
ACATCATTGCAGTCAATATCACTCA
Band lengths:
348-2303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: