MmuINT0007771 @ mm10
Intron Retention
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24285616-24287949:-
Coord C1 exon
chr17:24287730-24287949
Coord A exon
chr17:24285775-24287729
Coord C2 exon
chr17:24285616-24285774
Length
1955 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
GCTTTCTGTTCTCATTGCAGATC
3' ss Score
11.93
Exon sequences
Seq C1 exon
TTGGTGTTTCTGTGGTATAAGGAAGAGGCTTTTGCACACCACGAGAGCATCCCAGCGGTGGTCTTGATAATGATGCTCTACGGCTGGGCTGTCATCCCTTTGGTGTACACGGTCAGCTTCTCCTTTAACACTCCTGGCAGTGCATGTGTGAAGCTCGTGGTGATGCTCACCTTCCTGAGCATCAGCCCTGTGGTCCTCGTCACCGTCACCAGTGAGAAAG
Seq A exon
GTAATCACATTGACATTTTGCAGGGAGCAGGAATCTCTCCTCCAGCAGCCACTACAGCTGTCACACCCACAAAAACTCATGTCTAACCAAAGACGCAAGAGATAGCGCTCGCAGCCGCTGTGGGCCGAACACAGGGTGGACAAACAACTCAGTCACACTCACTCTGCAGATGGATGCTTCACCTGTGTGAAGTCTATGAACAGACAAAATGAATCTCGGAAATGGACTCAGAAAAAGGGTTACCTCTGGGCCTGGGGCAAAGGGCCGATAGAAATAACACACCGGAGAGCTTTGGGGGGTAAAGGATGTTCCTGATCTTGGACCGGACACTAGTTTATGTGGATTTACATACTTACGAATCACTGTCCACCTGTGATCCATGCATTTCACTAAAATGTAATGTTCCTTACTTTAAAAAAAAAAGTGAATATGTAAATGAATTAGTCAACATGGGAGGAAGAGCTCTTGTAAAAGAAACTAAGATCCAGCCATTATTTACAACACATACTTGAAACTGACAGCTTCTGTTTATGCTACCACAAATGGGTCAGGGTGGGACAAAAGAGCCTAAATGTTACCTCCACTTTTTTTTTTCTTTTTTTCTTTTTTTTCTTTTTTTTACCTCCACTTTTTATTAGGATTTATTATATGACTGTCTGTACGTCTCTGTGTTTTCCTGTGTGTCTGTGCACATATGTGGAGTTTCACATGGAGGACTGAAGAGGTTATCAGATCCCCAGGAGCTGTGGGGACCAGTGGTTTGTGAGCGACATGGCATGGTTGCTGGGAACTAAACTCCAGTCCTCCATAAGAGCAGAAGGCTCCTCACTGCCGGGCATGTCCTGGCCCCACAATGCTCTTTTTCTTTTGGATTTACATTTCACAACCCCTTCAGATGGATTTTCCTTCCCTTCCACATTCTTCTTTATTTTTAAAAGTAATTTTTATTTTGAAGGCGGGGCTTGGTGAGCTGGGTCAGGAGTTAAGACCACTCACTGGCTGCTCTTCAAGAGGACCCAGTTTTATTCCCAGCACCCAACAGCTCACGGATGTCTGTGACTCCCATCCCAGGGGATCGAATGCCCTCTTCTAGCCTCCAGGATGTACAAACATACAACAGACAGCATACAGGCAAAACATTCATATACATAAGATTAAGAAACATTGCTTTGTGTATAAGTGTTTGCATGAATATCTGATGCACATCACTTACATGCCTGGTAGCCACCGAGGCCAGAAAGGGGTAAAGGGGTGTCAGGTTCCCTGGAACCGGAATTAGACTGCAGTGAGCCACCATGTGGTTGCTGAGACTTGAACCCAGGTCCTCTGGAGAGCAACCAGTGTTCTTAACCACTGAGCCATCTCCCCAGCCATCTTCCTTACTTTCATTTAAAATTTGATTTACAATGTCCCTTTTCTCTGATGTGGGGAGTTGTCCTCTCTCCTAAGGGACCCTTTATGACAGTTTAAGTCTCCACAAACCATGGAGGAAGGGACCTTATACTCCTTGTCTGACTTCAGGATGACGCTCTGGAGCCAGGGATATGGTGGAATGCTCGCCTAGCATGTGCGAGTCCCTAGGCTCAATCTTCAGGACAGGGGAAGGTAAAACACCCCAGGGAGTCCAGAGCTGGCTCCCATCCCTGTTCTGCCTGGGTCTGCTCACCTCCAGCCCACACCCCTGGGCACTTCCTGCTGGAGCCATGCTGCCTCTGACTTTCTCAGATACAGTGTGCTCTCTGGATAAAGGAAGTGGCAGATCTAAGGAACTAAACAAAGAAACATAGAGTTAAATGAACAGAGGTGGGGAGAGTCAACACCAGGAGTCAGGAACCCACAGTGTGGTCTGGAGGCCTGAGAGTGTGACGTCCGGACTCCAGAAGTGACTGAGGAGAGAGATGACTGGTCACTTTCCCTTATGCTAGTAAAATTGGTGCTTTCTGTTCTCATTGCAG
Seq C2 exon
ATCTTGGCTACACGGAACTCTCAGACTCCTTGGATCATATTTTCCTAATTCTTCCTGGACATTGCCTGGGAATGGCCTTGTCCAACTTGTACTATAACTTTGAGCTGAAAAAGTTTTGCAGTGCTAAGAACTTGAGTGATATTGACTGCAATGATGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435:ENSMUST00000121226:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.1=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGCACACCACGAGAGCAT
R:
ACATCATTGCAGTCAATATCACTCA
Band lengths:
348-2303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types