RnoEX0005538 @ rn6
Exon Skipping
Gene
ENSRNOG00000004305 | Abl2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:RGD Symbol;Acc:1590898]
Coordinates
chr13:74154835-74219655:+
Coord C1 exon
chr13:74154835-74154991
Coord A exon
chr13:74155284-74155340
Coord C2 exon
chr13:74219593-74219655
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTCTTGCTGTCCTGGGACAGGAC
3' ss Score
6.97
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGGGGCAGCAGGTGGGCCGCGTCGGGGAGGCTCCCGGGCTCCAGCAGCCACAGCCGCGCGGGATCCGGGGCAGCAGCGCAGCCAGGCCCTCCGGCCGCAGGCGGGACCCGGTGGGGCGTACCGCAGACGCCGGCTTCAACGTCTTCACCCAGCACG
Seq A exon
GACAGGGCGACTGTCGAACAGTGGATGGTATCCCCAGGAAGGGAAGGATGAAGGCAG
Seq C2 exon
ATCACTTTGCCAGCTGTGTGGAGGATGGATTTGAGGGAGACAAGACTGGAGGCAGTAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004305_MULTIEX1-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=0.725 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGGCTTCAACGTCTTC
R:
CTGCCTCCAGTCTTGTCTCCC
Band lengths:
84-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]