RnoEX0005539 @ rn6
Exon Skipping
Gene
ENSRNOG00000004305 | Abl2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:RGD Symbol;Acc:1590898]
Coordinates
chr13:74154835-74221312:+
Coord C1 exon
chr13:74154835-74154991
Coord A exon
chr13:74219593-74219655
Coord C2 exon
chr13:74221142-74221312
Length
63 bp
Sequences
Splice sites
3' ss Seq
CCAATTTTTGTCTTAAATAGATC
3' ss Score
8.23
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGGGGCAGCAGGTGGGCCGCGTCGGGGAGGCTCCCGGGCTCCAGCAGCCACAGCCGCGCGGGATCCGGGGCAGCAGCGCAGCCAGGCCCTCCGGCCGCAGGCGGGACCCGGTGGGGCGTACCGCAGACGCCGGCTTCAACGTCTTCACCCAGCACG
Seq A exon
ATCACTTTGCCAGCTGTGTGGAGGATGGATTTGAGGGAGACAAGACTGGAGGCAGTAGTCCAG
Seq C2 exon
AAGTTTTGCACCGCCCCTTTGGTTGTGACGCTGAATCTCAGGCACTGAATGAAGCTATCAGGTGGAGCTCCAAGGAGAACTTGCTGGGCGCCACTGAGAGCGACCCTAATCTCTTTGTTGCACTTTATGACTTTGTGGCAAGTGGCGATAACACACTCAGCATCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004305_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=NA C2=0.112
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=PU(38.3=31.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACGTCTTCACCCAGCAC
R:
ATTAGGGTCGCTCTCAGTGGC
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]