HsaEX0000712 @ hg19
Exon Skipping
Gene
ENSG00000143322 | ABL2
Description
v-abl Abelson murine leukemia viral oncogene homolog 2 [Source:HGNC Symbol;Acc:77]
Coordinates
chr1:179100446-179198736:-
Coord C1 exon
chr1:179198376-179198736
Coord A exon
chr1:179102447-179102509
Coord C2 exon
chr1:179100446-179100616
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCAATTTTTTTCTTAAATAGATC
3' ss Score
8.45
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AAAAGCAGAATCTGTGAGTCGCCTGGAGGCAGCGCGGCGGCTGCCGTGAGGAGGCCGGGTGCGGAGCCGCCGGTGGCCCAGCCACTCAGGGCCAGGGCCTGGGCTGGGAGGGAGAGACCGGAGCAGCGCCAGGAGCCCGAGGCCGGAGCCGAGGAGGAATGTGACCAGGGGTCGGCGGGGGCGCGGGAGTACGCGAGAGCAGGGATGGGGCAGCAGGTGGGCCGCGTCGGGGAAGCTCCGGGGCTCCAGCAGCCTCAGCCCCGCGGGATCCGGGGCAGCAGTGCAGCCAGGCCCTCCGGCCGCAGGCGGGACCCGGCGGGGCGCACCACAGAGACCGGCTTCAATATCTTCACCCAGCATG
Seq A exon
ATCACTTTGCCAGCTGTGTGGAGGATGGATTTGAGGGAGACAAGACTGGAGGCAGTAGTCCAG
Seq C2 exon
AAGCTTTGCATCGTCCCTATGGTTGTGATGTTGAACCCCAGGCACTAAATGAGGCTATCAGGTGGAGCTCCAAGGAGAACTTGCTCGGAGCCACTGAGAGTGACCCTAATCTCTTCGTTGCACTTTATGATTTTGTAGCAAGTGGTGATAACACACTCAGCATCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143322-'0-8,'0-7,2-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.911 A=0.436 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001823=SH3_1=PU(38.3=31.0)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAGAGACCGGCTTCAAT
R:
ACTCTCAGTGGCTCCGAGC
Band lengths:
138-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)