BtaEX0001979 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015026 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr16:61915805-61992970:-
Coord C1 exon
chr16:61992814-61992970
Coord A exon
chr16:61917207-61917269
Coord C2 exon
chr16:61915805-61915975
Length
63 bp
Sequences
Splice sites
3' ss Seq
CAAATTTTTGTTTTAAATAGATC
3' ss Score
7.43
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGGGGCAGCAGGTGGGCCGCGTCGGGGAGGCTCCGGGGCTTCAGCAGTCGCAACCCCGCGGGATCCGGGGCAGCAGCGCAGCCAGGCCCTCTGGTCGCAGGCGGGACTTGGTGGGGCGCACCGCAGAGGCCGGCTTCAATATCTTCACCCAGCATG
Seq A exon
ATCACTTTGCCAGCTGTTTGGAGGATGGATTTGAGGGAGACAAGACTGGAGGCAGTAGTCCAG
Seq C2 exon
AAGCCTTGCATCGCCCCTACGGTTGTGATGTTGAACCCCAGGCCCTGAACGAAGCCATCAGGTGGAGCTCCAAGGAGAACCTGCTTGGAGCCACCGAGAGTGACCCTAATCTCTTTGTTGCACTTTATGATTTTGTAGCAAGTGGTGATAACACACTCAGCATCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015026_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=0.682 C2=0.172
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001823=SH3_1=PU(38.3=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCCGGCTTCAATATC
R:
AGATTAGGGTCACTCTCGGTGG
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development