RnoEX0006374 @ rn6
Exon Skipping
Gene
ENSRNOG00000020433 | Actn4
Description
actinin alpha 4 [Source:RGD Symbol;Acc:61816]
Coordinates
chr1:87095085-87096611:-
Coord C1 exon
chr1:87096526-87096611
Coord A exon
chr1:87096306-87096433
Coord C2 exon
chr1:87095085-87095170
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCACTTCATTTCTCTTGCAGACG
3' ss Score
11.17
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
ACATCGTGAACACAGCCCGGCCCGACGAGAAGGCCATAATGACATATGTGTCCAGCTTCTACCATGCCTTTTCAGGAGCGCAGAAG
Seq A exon
ACGGCAGTGGCCTCTCTTGGACTGGAAGCCAGCTCCCTCAGTCCTGGGCATTGCCGCCTATCTAGTCCTTGCTCAGTCTATTGAGTGCCTGCTGTACACCAGGCTCTGTTCAGGCAGTGAGAACACAG
Seq C2 exon
ATATTGTAGGCACTCTGAGGCCAGATGAGAAGGCCATCATGACTTACGTGTCCTGCTTCTACCACGCCTTCTCGGGGGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020433-'23-11,'23-10,24-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NO
C2:
PF0030726=CH=PD(23.1=82.8)
Main Inclusion Isoform:
ENSRNOT00000089305fB545
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGTGAACACAGCCCG
R:
TTCTGGGCCCCCGAGAAG
Band lengths:
171-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]