RnoEX0008002 @ rn6
Exon Skipping
Gene
ENSRNOG00000020205 | Agrn
Description
agrin [Source:RGD Symbol;Acc:2067]
Coordinates
chr5:173602501-173603912:-
Coord C1 exon
chr5:173603706-173603912
Coord A exon
chr5:173603098-173603155
Coord C2 exon
chr5:173602501-173602719
Length
58 bp
Sequences
Splice sites
3' ss Seq
CCGACTCTTGTGTCTTCCAGCCT
3' ss Score
7.71
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
Exon sequences
Seq C1 exon
ACCAGTGCCCGGAGACCTGCCAGTTTAACTCCGTATGCCTGTCCCGCCGTGGCCGTCCCCACTGTTCCTGCGATCGTGTCACCTGTGATGGGTCTTACAGGCCTGTGTGTGCCCAAGATGGGCACACATACAACAATGACTGTTGGCGCCAACAGGCTGAGTGTCGACAACAGCGGGCCATTCCTCCCAAGCACCAGGGCCCGTGTG
Seq A exon
CCTGACCTGCTGGCAGGATGAGGTGCTGCGCCTGCCCGCCAGGAGCCCACAGCCCGAG
Seq C2 exon
ACCAGACCCCGTCCCCATGCCATGGAGTGCAATGTGCATTTGGGGCAGTATGCACAGTGAAGAACGGGAAAGCCGAGTGTGAGTGCCAGCGGGTGTGCTCCGGCATCTACGATCCTGTGTGCGGCAGTGACGGTGTCACTTACGGCAGTGTGTGCGAGCTGGAATCCATGGCCTGTACCCTTGGGCGGGAAATCCAAGTGGCCCGCAGAGGACCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020205_MULTIEX2-1/13=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=PD(95.8=97.1)
A:
NO
C2:
PF0764810=Kazal_2=WD(100=55.4)
Main Inclusion Isoform:
ENSRNOT00000045678fB820
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGGCTGAGTGTCGACAA
R:
GGCTTTCCCGTTCTTCACTGT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]