RnoEX0009333 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73690163-73698609:-
Coord C1 exon
chr16:73698463-73698609
Coord A exon
chr16:73691071-73691188
Coord C2 exon
chr16:73690163-73690537
Length
118 bp
Sequences
Splice sites
3' ss Seq
CGCCATTTTTGACCCCTTAGAAC
3' ss Score
6.71
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
TGGAGAATCTGTACACGGCCCTGCGGAACATCGACAGAAGTGAGATTGTTAACATGTTGGAGGGCTCCGGCAGGCAGAGCAGAAACCTCAAACCAGACCGGAGGCATGGGGACCGGGAGTACTCATTGTCACCCTCCCAGGTGAATG
Seq A exon
AACCCTCACCTGTGCCACTGTAGATCATTCAGAGTTTGTGGAACCAATATGCACCTTGAGGAAAAGTCACTTCAATGCCAAACCAGAAGCCTGTTTCCCACTTGACCACCGCACTGAG
Seq C2 exon
GTTACTCCTCGCTGCAGGACGAGCTGCTGTCCCCCGCCTCCCTGCACTACGCACTTCCCTCTCCACTGTGTGCAGACCAGTACTGGAACGAAGTGGCCGTCATAGACGCCATCCCCCTGGCGGCCACGGAGCATGACACCATGCTGGAGATGTCTGACATGCAGGTGTGGTCTTCGGGCCTCACACCCTCCCTGGTCACTGCTGAGGACTCCTCTCTGGAGTGCAGCAAGGCCGAGGACTCTGACGCCATACCAGAGTGGAAGTTGGAGGGGGCACACTCAGAGGACACGCAGGGCCCGGAGCTGGGCTCTCAGGACCTGGTGGAGGACGACACAGTGGATTCAGATGCCACAAATGGCCTGGCAGATTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=1.000 C2=0.540
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000064070fB1057
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCTGTACACGGCCCTG
R:
GGCCACTTCGTTCCAGTACTG
Band lengths:
243-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]