RnoEX0009334 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73690000-73698609:-
Coord C1 exon
chr16:73698463-73698609
Coord A exon
chr16:73690151-73690537
Coord C2 exon
chr16:73690000-73690072
Length
387 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGTCTGCCTTTCCAGGTT
3' ss Score
12.77
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TGGAGAATCTGTACACGGCCCTGCGGAACATCGACAGAAGTGAGATTGTTAACATGTTGGAGGGCTCCGGCAGGCAGAGCAGAAACCTCAAACCAGACCGGAGGCATGGGGACCGGGAGTACTCATTGTCACCCTCCCAGGTGAATG
Seq A exon
GTTACTCCTCGCTGCAGGACGAGCTGCTGTCCCCCGCCTCCCTGCACTACGCACTTCCCTCTCCACTGTGTGCAGACCAGTACTGGAACGAAGTGGCCGTCATAGACGCCATCCCCCTGGCGGCCACGGAGCATGACACCATGCTGGAGATGTCTGACATGCAGGTGTGGTCTTCGGGCCTCACACCCTCCCTGGTCACTGCTGAGGACTCCTCTCTGGAGTGCAGCAAGGCCGAGGACTCTGACGCCATACCAGAGTGGAAGTTGGAGGGGGCACACTCAGAGGACACGCAGGGCCCGGAGCTGGGCTCTCAGGACCTGGTGGAGGACGACACAGTGGATTCAGATGCCACAAATGGCCTGGCAGATTTGCTAGGTCAGGAGGAAG
Seq C2 exon
GCCAGCAGCGAGTTCACGCCCGAATCACAGACTCACCCTCAGTGAGGCAGGTGCTGGACAGAAGCCAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241_MULTIEX1-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.540 C2=0.880
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000064070fB1057
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATCTGTACACGGCCCT
R:
CTGGCTTCTGTCCAGCACCT
Band lengths:
214-601
Functional annotations
There are 1 annotated functions for this event
PMID: 1388161
Skipping (probably more as an ALTA) exhibits increased affinity for the cytoplasmic domain of the anion exchanger, spectrin, and tubulin.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]