RnoINT0017370 @ rn6
Intron Retention
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73690000-73690537:-
Coord C1 exon
chr16:73690163-73690537
Coord A exon
chr16:73690073-73690162
Coord C2 exon
chr16:73690000-73690072
Length
90 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGG
5' ss Score
4.07
3' ss Seq
TGAAGTGTCTCTTGTTTCAGGCC
3' ss Score
8.42
Exon sequences
Seq C1 exon
GTTACTCCTCGCTGCAGGACGAGCTGCTGTCCCCCGCCTCCCTGCACTACGCACTTCCCTCTCCACTGTGTGCAGACCAGTACTGGAACGAAGTGGCCGTCATAGACGCCATCCCCCTGGCGGCCACGGAGCATGACACCATGCTGGAGATGTCTGACATGCAGGTGTGGTCTTCGGGCCTCACACCCTCCCTGGTCACTGCTGAGGACTCCTCTCTGGAGTGCAGCAAGGCCGAGGACTCTGACGCCATACCAGAGTGGAAGTTGGAGGGGGCACACTCAGAGGACACGCAGGGCCCGGAGCTGGGCTCTCAGGACCTGGTGGAGGACGACACAGTGGATTCAGATGCCACAAATGGCCTGGCAGATTTGCTAG
Seq A exon
GTCAGGAGGAAGGTCAGAGGTCAGAAAAGAAGAGTCAGGAAGTCTCAGGCACAGAGCAGGACACAGAGACTGAAGTGTCTCTTGTTTCAG
Seq C2 exon
GCCAGCAGCGAGTTCACGCCCGAATCACAGACTCACCCTCAGTGAGGCAGGTGCTGGACAGAAGCCAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241:ENSRNOT00000064070:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=NA C2=0.880
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGCCATACCAGAGTGGAA
R:
AGGGTGAGTCTGTGATTCGGG
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]