RnoEX0009328 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73687146-73690537:-
Coord C1 exon
chr16:73690163-73690537
Coord A exon
chr16:73690000-73690072
Coord C2 exon
chr16:73687146-73687422
Length
73 bp
Sequences
Splice sites
3' ss Seq
TGAAGTGTCTCTTGTTTCAGGCC
3' ss Score
8.42
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTACTCCTCGCTGCAGGACGAGCTGCTGTCCCCCGCCTCCCTGCACTACGCACTTCCCTCTCCACTGTGTGCAGACCAGTACTGGAACGAAGTGGCCGTCATAGACGCCATCCCCCTGGCGGCCACGGAGCATGACACCATGCTGGAGATGTCTGACATGCAGGTGTGGTCTTCGGGCCTCACACCCTCCCTGGTCACTGCTGAGGACTCCTCTCTGGAGTGCAGCAAGGCCGAGGACTCTGACGCCATACCAGAGTGGAAGTTGGAGGGGGCACACTCAGAGGACACGCAGGGCCCGGAGCTGGGCTCTCAGGACCTGGTGGAGGACGACACAGTGGATTCAGATGCCACAAATGGCCTGGCAGATTTGCTAG
Seq A exon
GCCAGCAGCGAGTTCACGCCCGAATCACAGACTCACCCTCAGTGAGGCAGGTGCTGGACAGAAGCCAGGCCAG
Seq C2 exon
AACAGTGGACTGGTATAAACAGGGTTCAGCAGCATCATATCCACAAGAGGCCGCACAAAGTTCCTGGCAAGAGGAGGTCACGCAAGGCCCACAGTCATTCCAGAGAAGGATCACCACCATCCAAGGGCCGGAGCCCGGCACACTTCAGGAATATGAGCAGGTGGTGGTGTCCACCAGGGAGCATGTGCAGAGGGGGCCACCTGAGAGCGACAGCCCCAAGGCCGGGAAGGACCCAAGTCTGTGGGCATCGGAGAGTGCCTTCTCTCAAGAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'55-57,'55-54,58-57
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=0.880 C2=0.961
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACGACACAGTGGATT
R:
CCCTTGGATGGTGGTGATCCT
Band lengths:
181-254
Functional annotations
There are 1 annotated functions for this event
PMID: 1388161
Skipping (probably more as an ALTA) exhibits increased affinity for the cytoplasmic domain of the anion exchanger, spectrin, and tubulin.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]