GgaEX0004702 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2666628-2669555:-
Coord C1 exon
chr22:2669409-2669555
Coord A exon
chr22:2667468-2668020
Coord C2 exon
chr22:2666628-2666886
Length
553 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGTCTGCCCATGTAGGTT
3' ss Score
10.25
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
TTGAGAACCTGTACACAGCGCTGAGGAACATTGACCGCAGCGAGATCATCAGCACGTTGGAGGGCTCCGGCCGGCAGAGCCGCAGCATGAAGGGCAGCTGGCGTTACATGGACAGGGACTATTCACTCTCGCCCTCCCAGATGAATG
Seq A exon
GTTACGCTTCGCTGCAGGACGAGCTGCTCTCCCCTGCCTCCCTGCATTATATGCTGCCATCCCCTCTGCGTGCTGACCAGTACTGGAACGAGGTGGCCATCATGGACGCCATCCCCATGGCCGCCACTGAGCAGGACGCCCTGATGGAGATGTCTGACATGCAGGTGTGGTCCTCAGGGCTCACCCCTTCACTGGTGACGGCTGAGGACTCCTCTCTGGAGTGCAGCAAGGCTGAGGACTCGGATGCTACAAGCGAAGGTCGTTTCCCAGGGCACCTTCTGACAGATGCACATGTCCCAGACCACATGGGCTCTATGGACTTAGTTGAGGATGACACAGTGGACTCAGACGCCATGAACGGGCTGATTGAACTGCTAGAGCAGGAGGAGGGGCAGAGGCCAGAGGGGAAGATGCCAGCCAGCGACCACCAGCTAGGGACTGGAGAGCAGAACCCAGAGAGTGAAGTCTCTTTTGTTTCAGTTCAACAGAAGGTACAAGCCACGATCGTGCCATCGCCAACCGTGAGCCACACAGTGGAGAGGAGTGCAGACAG
Seq C2 exon
GCTGAGGGACTGGAATGCAGAAGGCTCCTTTATCTCCTGCCTACAGGACCTGACAGAGGGCTCCTGGCAGGAGGGGGTCACCCGACGGCTGGGTCCAGCACACACCGTGGCTGCTGGGGCGCAGGGCCAGGAGCAAGAGCAGGTCCTGGCGCCGGACGTGGAGCTGATGCGGGTCAGCTCCACAGAGGACAGCGACTGGCAGCCCCAGCACCCCGCGGGCGGCTGGCCAGAGGAGCCTGACAGCCGCTGCTTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'44-44,'44-41,45-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.652 C2=0.693
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.4=46.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAACCTGTACACAGCGC
R:
CAGTCGCTGTCCTCTGTGGA
Band lengths:
345-898
Functional annotations
There are 1 annotated functions for this event
PMID: 1388161
Skipping (probably more as an ALTA) exhibits increased affinity for the cytoplasmic domain of the anion exchanger, spectrin, and tubulin.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]