RnoEX0009360 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20473559-20479685:+
Coord C1 exon
chr20:20473559-20474546
Coord A exon
chr20:20474708-20474800
Coord C2 exon
chr20:20479579-20479685
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCCCATTCATCCCACTTAGGTC
3' ss Score
8.99
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CCCGAGACCTGGGACGTTTGTGCAGATGATTCTAGCTCTTTAGTGGCCGGGGCTGAACTAGGTTTAGAGGACTCAGTACCTAGCCATGATTCCTGGTGTCAGTCTGTCTGGGCAGGGAGATGTCAGTAGACAGACGGCATAGAGGCGATGGGGTGCCAGGCAGATCACCAACTCTGTGCGTCTGGCCAAGTAACCTAGCTTGCGTGTTGCCGTTTCCTCAAGGGAACAGTGAAGGGCTTGGGATGAAACCGGGAGGAACAATAACCCTCTCAAGAAAGAGAACAGTAACACGCCTTGGAGTTGTTTTAGAATCCACTCAGTTCGTACGTGGAACTTGCTGAACAGTAGCTGCCGAGCCCACAGAAACCCTCAGTCAGGAGGCTCTGTTAGAAAAGTCTTCGAAGAAGCAAGAAGGAAACAAGAGTAGCGGCTGGCCAAGCCCAGGCACAGCAGGGGCAGCCGGGGAAGATCGCAGCTCAGCTCTCCGTTCCCTGCTTCAG
Seq A exon
GTCCTCTCTGGGACATTTCCCAGAATGCATCTGAGATACAGATACCTTGCCATCTGTTTTCCTGATACATGATGGAGACAGAATTGAAGCCAG
Seq C2 exon
GACCACGCGTTCGTACTGCCAGTATTGAGAAACTCACCAGAGATCAGCAGGGAGGAGAATCTCTAGCAAGAGCGGAGTGTGGATCTGCCACCCCACACATCAGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-'110-105,'110-104,111-105
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACAAGAGTAGCGGCTGG
R:
ATCCACACTCCGCTCTTGCTA
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]