RnoEX0009386 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20471197-20480623:+
Coord C1 exon
chr20:20471197-20471282
Coord A exon
chr20:20473559-20473661
Coord C2 exon
chr20:20479579-20480623
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATTAATTTTGTTGCTCTTAGATA
3' ss Score
7.39
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CAGGGAGAAGGCTATAAGGTGAAAACAAAGAAGGAAATCCGGAATGTGGAGAAGAAAGCCCACTAGTGACGGTGACGTCAGTCCAG
Seq A exon
ATAGGCACTGTTCCTATGCAGCTCATCGACGAACACCAGGCTCAGACCCAGTCCTTTGAATGGCTGCTGTCACGAAGTGTTTAGAATGACTAAGTAATGCAAG
Seq C2 exon
GACCACGCGTTCGTACTGCCAGTATTGAGAAACTCACCAGAGATCAGCAGGGAGGAGAATCTCTAGCAAGAGCGGAGTGTGGATCTGCCACCCCACACATCAGTGACATGTTTGGGGTTTTGGGTTTTTTTGGTTTTTTTTTTTAATGCAGAAGGATAAAGAAAATCACCTTTTTTTTTATTTAGCATGAGCCAATTTACAGAGCATGGAGACTCACTTTCATTCCCGGCGCTGACACGCGTGCACTAAGCAAGTGCAATGTAAGATACAAGAAGCCATGTTGTTCAGACTCAGCCTCAAGTAATTTGGTGTCACTTTCGGAGAAGACAGACAAACAACGACACCTGTGCCACCGGAAGGAGGGACAGCACAAGATGGAGCGATCAAATCCAGAAGACACACTGAAATTACTAAATCCACAACAGCTCGCCTTATTTTTCTTGGACCCAAACTAACTGTCAGGGTATAAACACTGTTTGTTTCTTTTTTTTTTTTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288_CASSETTE6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCCACTAGTGACGGTG
R:
AAGTGAGTCTCCATGCTCTGT
Band lengths:
252-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]