RnoEX0011634 @ rn6
Exon Skipping
Gene
ENSRNOG00000036880 | Arl5c
Description
ADP-ribosylation factor like GTPase 5C [Source:RGD Symbol;Acc:1563128]
Coordinates
chr10:85947077-85948080:-
Coord C1 exon
chr10:85947839-85948080
Coord A exon
chr10:85947235-85947370
Coord C2 exon
chr10:85947077-85947137
Length
136 bp
Sequences
Splice sites
3' ss Seq
CGTTTCCCTGCTTATCCTAGGAA
3' ss Score
8.14
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
ATCACTTAGACCCTCCGCACGGGCGGGGAGCTAGCGTCCGGCGGGAATCCCAGGTCTCGAGGCGTCACTTGGGGATTCCCACATCTGATAGGAGCAGCGGGTCCGGCCCTCCCCCAGGCGGTGCTTTGAAGATTTGGGGCCAGACTCCAGCCCGGGAGGCTGCTGAGCCCCGCAGGTCCCCAGCTCCGGGAGTGCCATGGGACAGCTGATAGCCAAACTGATGCGAATTTTTGGGAGCCAGG
Seq A exon
GAAAGGGAGGATTGGAGGGAGGCACGCAGAAGGCTGAGATACGGAGCTTCAGTTCCTTCCTTGTGGTTGGGTTCGGAGATTGCCGAGAGATGGGTAGAACCGGGAGAGAAGGCGTCGATCCAGGCAGGAGCGGAGG
Seq C2 exon
AGCACAAAGTCATCATCGTGGGACTGGACAATGCAGGAAAGACCACCATTCTCTACCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036880-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.435 C2=0.286
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(8.5=93.8)
A:
NO
C2:
PF0002516=Arf=FE(11.4=100)
Main Inclusion Isoform:
ENSRNOT00000082427fB1437
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATCCCAGGTCTCGAGG
R:
TGGTGGTCTTTCCTGCATTGT
Band lengths:
248-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]