RnoINT0020992 @ rn6
Intron Retention
Gene
ENSRNOG00000036880 | Arl5c
Description
ADP-ribosylation factor like GTPase 5C [Source:RGD Symbol;Acc:1563128]
Coordinates
chr10:85947077-85947938:-
Coord C1 exon
chr10:85947839-85947938
Coord A exon
chr10:85947138-85947838
Coord C2 exon
chr10:85947077-85947137
Length
701 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GTTCCCCTGGATGCCTCCAGAGC
3' ss Score
5.13
Exon sequences
Seq C1 exon
GACTCCAGCCCGGGAGGCTGCTGAGCCCCGCAGGTCCCCAGCTCCGGGAGTGCCATGGGACAGCTGATAGCCAAACTGATGCGAATTTTTGGGAGCCAGG
Seq A exon
GTAAGAGGAGCACCGGCCAGCCCAGTGACCTCTTTGAATCCGCTGTCTTCTGGGGCTCTTGGGATTTTGGAGTCGTCGGGGAAGACCGACTGGGAACCTTGGGCTGCTAGCGTTGGTTTTGTGCACTCTCATAGGCTCCGCCGCCTCCTGCCGGCTCTCCTCCCGCGCCCCCTTGACTGCGCCTCAGTGTGCTCGGCGCACAGGGGTGGGAGAACCTTCTGTCCCCAACACCACCTCCCAGCTGAGCTATGCGCGACCCGGATGGGCCCCAAAGTCAGTTTCCTGATACTGTGACTTAGAGCCCAGCATGCTTCAGACCCTTCAGACAATCGCCGTCTAGAAAAGTAGAGGGAGGTGGGATAGGGGTCCTGAGGGGGTGTAGGAGTCCGGTCCGATGGCAAGTAAAGTGGTCCAGTCTCCGGCAGAGGTCTCCAGCCCGCCAGGAACGCGTTTCCCTGCTTATCCTAGGAAAGGGAGGATTGGAGGGAGGCACGCAGAAGGCTGAGATACGGAGCTTCAGTTCCTTCCTTGTGGTTGGGTTCGGAGATTGCCGAGAGATGGGTAGAACCGGGAGAGAAGGCGTCGATCCAGGCAGGAGCGGAGGGTGAGGAAGAGGCCAGGATGAGACGCCTACTGGGGACACCCAAGCCGGTGCTCATCCGGGTTGGTTCTGACCTTACCGTTCCCCTGGATGCCTCCAG
Seq C2 exon
AGCACAAAGTCATCATCGTGGGACTGGACAATGCAGGAAAGACCACCATTCTCTACCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036880:ENSRNOT00000037318:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(8.5=93.8)
A:
NA
C2:
PF0002516=Arf=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]