GgaINT1006695 @ galGal4
Intron Retention
Gene
ENSGALG00000012509 | ARL5A
Description
ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:HGNC:696]
Coordinates
chr7:34817871-34818291:-
Coord C1 exon
chr7:34818234-34818291
Coord A exon
chr7:34817932-34818233
Coord C2 exon
chr7:34817871-34817931
Length
302 bp
Sequences
Splice sites
5' ss Seq
CTGGAAAGA
5' ss Score
1.27
3' ss Seq
TGGTTGTATTTTTATTTCAGAGC
3' ss Score
7.91
Exon sequences
Seq C1 exon
CTGGCTATAATAGTAGTATGGCCGTGGAAAGGCACACTTGGTTTGTATGAGCATTCTG
Seq A exon
GAAAGATGCTATAATTGGGGTAATAGAAAATGCAGTCTGTTATTATCTGCAGGAGTGTAGAAGCTTCAGAAAGGATGCTCCAGCAGCTTAGAGGAGGAAAAAATCCAAATGTGATATCTTAGAAATTGTTCCTTCAGGTGTGCAGACAGGGAATGTGACAGCAGCACAGGCAGACTTAGGCATGGTCTGAAATCCAGCACCAGAGCTACGTGCTGGCTGAGCAGCATGAACCTTGTCTTGTAACGCAGTCATTGTGATAGCAAAGCTAACAATGTGACTTACTGGTTGTATTTTTATTTCAG
Seq C2 exon
AGCACAAAGTAATCATTGTTGGTCTGGATAATGCAGGAAAAACTACCATTCTTTATCAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012509:ENSGALT00000020434:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(5.3=45.0)
A:
NA
C2:
PF0002516=Arf=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]