MmuINT0018928 @ mm10
Intron Retention
Gene
ENSMUSG00000036093 | Arl5a
Description
ADP-ribosylation factor-like 5A [Source:MGI Symbol;Acc:MGI:1922673]
Coordinates
chr2:52416636-52424901:-
Coord C1 exon
chr2:52424590-52424901
Coord A exon
chr2:52416697-52424589
Coord C2 exon
chr2:52416636-52416696
Length
7893 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TCTGCTGGTTTTTATTTCAGAGC
3' ss Score
9.28
Exon sequences
Seq C1 exon
CCGAGCCACCGCCGGAGAGGAGCTGGGGGAGGACGGTGGCCCGCGAGGTTCGAGCAGACAACGCGGCGGCGATGTCCGCGAGCCAGGCGAGCGCCGCGGCGGTAGCGGCGGGGCCTCGCGCGTGGCTGGGCGGCCTGGGCTGCGGCCTCCCCGCGGGTCCCTGGAAGCGGGCGCGCGGCCGGCGCGGGAGCAGAGGCGGAGGCCCCGGCGCGTCCTTCTGCCCCGCAGCCTGAGCCCGGGAGGCTGGAGGGCTCCGCTGCCCGAGGATGGGAATTCTCTTTACCCGGATCTGGAGGCTGTTCAATCACCAGG
Seq A exon
GTGAGGCTGGGCCGGGCGGGGAGGTCCCGGCCCTTGTCGGGCAGGAGGGTCGCCTTTGTCTCCGGGGAGCTGGGGAGAGGTTCCTCCCGCCATACACCCATTTCTCCGATTTGATCGCGAGCGCAAAAGGTGCCCTGCCCCACGCCGAGGGCCCAGCGCGCTGCCTGGCCTGCTTCCATCCCCGTCGCCTGCCCGCAATTGTGTTTGGGCCGCACGGGCAACAGCTGGGGTTCTAGAGTGAGGACCGAGGGCCCTGACCCTAGCGGCGCCACCGAGCCCACGGCTTGCAGAATGCGGAAAACTGGAACTAGTGCTGGATCCGTCTGGTTCGCTTTGGGGGGTGGGGGTGGGGGTGGGGGTGGGGGGGATGGGCGGGGAGACCCTCGCTGCGGAATAGTGATGGAGTGTCTCTCCTTTGCGCCGTTTGTCTCAGTGGTAAAGGTCAAGCCTAAGGTCGTTTTCTTTCTTAGGTTATTAGAAGGTTTTGGGTTTTGTTTTGTTTTGTTTTGTTTTTGGCCCTTGTTAAAGTGTTTCGCTGAAAGCTTTTAAAAGCCTGCCTCGGGAGGCAGGCTTCATTAGCATTAGGTAACTAGCAGGTTACTGTGTTAAGTTCGCCTAAATGCAGACATTTGCCACGGAAAGGCATAGGGGATTTATTAAAAAAAAAAATTACAAAATGGGTGTGTGATACTGGAGAGAATATGGTCCTAACAGAACTACATAGTTACTGAAATGAAATATAGTGCTTTTTTTTAAAAAAAGCTCTACTTGCAGTTCATTCCATCTGTCAAGCACGTACAGTTTTTCTCTTGTATAAGCTGGTAGCGTTGTCGCACCCCCACTTTTTCCAGTTAAAACTTAATGAACGGTGGCGCCTACTATTTAGAAGGAGCAGTTGCCGGGCTTGCTCCTCCTCTGGGATAGAGCTGGTTTTATGGGACTTGTAATCCCTAGTGGGTTCTGCTTTTTTTAATAATAATTTTTTTAAAAATGATACCTAAGATAACGGTACTAAATGAAGTGGAAGGCAATAAAGAGGATATTTCCATTAGCTCTGTCTGGTCAGCAGAGAACGTGTGACGGGGTAGTGGTTTCTAGTGGCTTCATAATTCTGTGGGTTTAGATACTCTCACCTAGCACAGGAGGGATTTGTGGGGTCTACAGTTTTTGAATATTTAATCTCTAGGTTTGAAGTACTAAAGGTTACATTGTTGTAGAACTGGTGATATTTGTGTGGGTAATAAGTGTTCTTATTCTAGTTCTGTCCTCTACAGTCTTGAATTTAGTGAGACTAGTGTTTCAGTTCTGCTTTGGTTTAGAAAGACCTTTTGCTTTAAAGTGTCTCTGGTACTGGTCTCACTTTCTTCTTTGAGTCAGTGACCAAACCGTTGCTGTAACTTAAAAAATGAATTAGAACTTTAAAAGAAACTCACCTAGTTGCACATGATAGCAGGAATGCATTGGTAGCAGCACAGATCTTGTGCTCTGCATTTTGTAGTAGCATTTGCCTGAACGTTTACTCAGAGTTTGAAAATTAACAAGAGGATTAATAGAGTCCAGTTCCTAGGAAATTACCAGTCAATAGAGTGAGATCGTGAAGAAAAAAAATCGTTAAATGGTCTCTTCCCAGCTCAGTAGCCTCACGGAATTCACTGTCACAAACACTTGTTGCTAGTCTTGGACCTGTGGAGAAGGGGGCACATAAGTTAGGTGTGTCTTCGATGCTTTGTTTTACAGAAGGATCAGCACACGTTTCTATACTCTTTTCATGGAGAGCTGCGGAGAGAGGCTTTGGGTAATTGCAGAGTTTGCTATATCGATGAACGCAGAGACTTAGCAGCTCTGGCTTCTCAAAAAGCAGCTGCTCAATTAAAGCTGAGCTGGTGAACTGCTTGCTGGGCCCAGAAAACCAGAGCTATGTTTAGGTGGGGCACAGATTCCGGAGCGCTCAAACTTTATTCTAGATACTGCCATTTATTGACACCATTAAAAAGTATTGTAGCTGGGGCTGTAGCTTAGTTGGTAGAGGGCCTGCCTCCCTTTCACCACACCCATTCAAGAGATAACGGGATGTGGTGGTGGGGTCCCCTGTGATCCTGTCACGTAGGATGCACGTCCTTGGTTACATAGTAAAGTTAAGGCCAACCTGGGCTAACATGAGATTCTGTCTCCGAATATTTTCCTGGAAGAGAGGAAGCAGGCTCGAGTGACTTCTGTCAGACAATTGGGAAAGGAAACAAGTGTGTTGATGCTTGTTGATCTTTTTAAGAAGCCACTGTCAGCTTTTCTGTCCCCTCTTTTCTCCCTGTTGACTGAGTTGTGAATCTTTAGCTTAGATTTAGGTTTGCCAACAATGACTGTATCTCTAGAACTTGTTACCAGTGTTTGGTTTAAATACCTTTCTAGGGCAGCAGTTCTCAACCTGTGGGTCTCAATCTCTAAGACCATGGGAAATCATTGATTTTTTTTACTTTTATAACAGTAGCAAAATTATAGTTATGGAGTAGTAACAAAAATTTATGGCTGAGGGGGTCACCACAACATGAGGAACTATGTAAAAGGGTCTTCGAATATGGGAGGCTGAGAACCACGGCTCTGGGTGTTGGGAATAAGTCGGAGAATGAAAGAGACAAATCCCCTCGCCTTTACAAAGCGGCTTGTTATAGTCCAGGGCAGCAGAAAAGAAACCCAGCCTGTCTCTATAGATGAAGGAGCACTTCGTAATTCTGGTGACTTTTGCAACACTGGTTCCAGTTGTTCCATCGGGTGTTGGTTAATCTGCCTCAGTTCTGTTCCTTCTAAAAACTTTCTTCTTTAAAGATGCTCATTAGGGCTTTATTTATTTAAAATAATAGGCCTGGGATGTTAAACAAGGATCTCTAGTGCCAGCGTGTTCTCATCACCCCTACCCCCACCACACACACACACACACACACACACACACACACACCTTTATAAAGAATGTGGTAGGTGAAGGAAGATCCTTTCCAACACCTACGTAGACTGTAAAAGGTTGTGGAGTTTCCCTCTTGGCAGCCTTGCTCCTCCCTCTGCTCATTGGTTGTTAGTTAGGAAAGGAACCAAGTTATGAATGAGTGCTGGCAAAGGCACAGGCTGTGTTGGTCTTGTGTTGGAGAAGCCACCTCAGTTCCTGGTCTTTTTTTCAAGGGAGTTCAACCATGCAGGAGTGTACAGCAGGAAGGTGACTGGACATTGTACGCTGTCAGGAGCTGTCAGGACGCTGCCTCTTAGCTCCAGGTGGAGCTCACTGGAGGGACCTTGGGGGAGGAAATGCTCGTTCCTGGTGACAGTGTGCACTCTGGACGAGCTGTTTGTAGCACATGCACCTTCACCCTTGGTACCTGGGGCTTTCGTGGCATGGTGATTACTTTTATCTTCTCAGCAGGACCTCGCTCTAATCTGTATGAGACATTTTCTTTGTGAGACTTCCCAACCTCAAGTTAGTGTGTGATTTCTGCCTCCTAATGGCTCGCTGATTTTCATCTTTGTTTCTCATTGTTTTTTCCTCCCTCGGCAATGTCTTCAAAGCAAGTCTTTGTTACTGAAGTTTTAGCTTAATCAGGTGTGTCTGAATGTTTGATGTTGGGACGCAACTTGTCATCTACAACGTTCATGCTCAGAATTGCATGGTCAAATTTTACCAAAAAAAAAGTAAAAAACGTCATAGTGTTTTAAATAAATTTATGGCTTTTGTGCTGGGTCATGTAGAATTGACATGCCTGCCAGACCTAGACTTAGTAAGGCTAAGTGATATTTTGAATATGAGATGATAGAGGTGTTTGTGTTTTCCAACTTTATGTAATTCATAGAGATAGAAGGTTTTTAGATGACAGTTACTTTTAATTGTTTTGATTAGTTTACCAAATAGTTGTCAGATACAGACAACCAGTGGACTAGTAGTGTGCCTGGGTGTGTCAGAGAAAAGGAAGGAGGAAAGAACCATGGACAAGAAGTATTTTTATGACAAAACAGTATTGATTGGTAAGGTAGAGGCCAGGTCAAACTCTGAATCCCAGCAGACAATAATGGTGTGTTTGAGCTTTCCTGAGTGCAGGAGTGCTGTGGGGGAAGGCCTTCTAAATGAAGTCATACAAACAGCGATTGCAGTGATTCACAAATGTCACGGAGTTGGAATGGCCAAAGTCTGATTGACATCATTGCCTCCTAATATGTATTGTATGTTCTGTGGAGTATTTGTCTTGAAGCACATTGTAAGATGGAATTCTAGCACTGCAGATCTACATTCTCTATAAAGTGTTGCTATGTCTAGTAAGGAGGAGTGCAGAGTGAGGAAACCGTAAGAGTGTGCGGGAGTCGATTTACTATTAGGACACATATGGATGATCTAATTCTGCATGGGGATAAACTGACTTGTGACTATTGCGTTGGCACCTTTATCTCTTAACCTCTTACACAACTCTGTTTTAATGTTACAGTTCTCATTTTGACTCATACACCCTATCTTTGATTTAGGAAGCCACCAAAACAGTCATTGATACTTTCTTGTAAGCACATTTCCATCTAGTAGTTGGAAGTGAATTCTGTTTGTGGACAAGGCTGTGTGAGCGAGGGATCTGGATTACAGACTCCCCCAGGTTGAACTTCGAACGTACACGCACACGCACAGGCACACGCACACACACACACACACACACACACATGAGTCTGTGGCTCTTTGGAAAATTTAAGTTTTGCACGTGCTTGACTTCAGTTTCTTTTTTTTCTTTCTTTCTTGATATGTCATGATTGCCTTTTATATTACAATAGCTTTACAATCCCTTTGTTGATATGTAGTCTCAGATGGGGTGTGTATTTATGTATTTGGTGGTGGTGTAGGACTTGGATAATTTTGTAAAGTTAAACAGAAGAGCAGTGTCTCCGGAGTGGAGAATAGTGCTAGCAACATTAAATGGAAAGTCGGTGGATAGTCTGGAGATGAGGTCCACAGACAGCTGTCTGGATTCCAAGAAAGGAATTAGGAGCTTAGGATTAAGACATTTACCCTTTGTCACACTCATCCCTTCTCACCTTGTTCGCTGTGATGTGATGTAACCTCCGGCTTCCTATCTGCTTTACCAGCAGGGACCTAGGAGGACATGTGGCCTTCAAAGCCTGTCCCAGCGCCTTCTTCCCTTTCCTGCTCTCACCCAGCCTAACCTTTGCCTGTTAGGGCTTCCTCAATCCCAGTCTTGTGGAACATAAAATAATGGTTCTTTTCACGAGCTAAATCTATTATCTAGCTGTTTTTCCATCTTGGATAGTCTTACCTGTTAAAAAACTTTACACCATGCCTCCAGCTACTGGGTCACACAATGTATCCTCCACCATAGCTCCCACCTCTGGGTTTGTTTGTTTGTTTGTTTGTTTGTTCTAGACACTCTATCCTTTCTTTATCTTGTATCCTGAGAAAATGATTTTTTTTTGTGATGTGAGCCTCTTCCCCTCTGCCTTACTTTAGCATCTATTGCTGCATAGTGTGTCTGCTCAGTATGCTTGCTCGCTTGCTTGTCCTGCTCAGCACTTGCCCTTGTGCGACACCTCCCTCCCATGGAGCCAGATGTGATACCCTCCCCCATGCTTTCCAAAGTGGGTTTGTTGTTGTTGTTGTTGTTTTTGAAAAACAGTGGTTTTAGAATCAGGATCACAAAACAAAGGCAAAGAAGCAAAACTTGTGTACAAACTAGAGGAGGGGTTTAACATGAAAGGTATTGTTTTAGAAACCAGATATAGATTTCCTGCCAGTATCTCCTCTTATTCAGTGTGTGTTTAGAAGCTCAATTTAGAATGTCATTGGAAAGAAGGGTTTTTTTTGTTGTTTTTTGTTTTTTAATGATTATTACAAAGAGTCCTATCCTATTTAACAGTAAGCTGGCATTCATTTCGACAGCCTGTTCCCTGGTGACCAAGATGCTCCAAGGGACCCTCTTTACAAACTCAGGTTAATCTTTAGAGGCAAAAGGATTCATTACCACTGAGAACGTTTAACATGATATGCCTCACACTCTGCAAGCAAGAATGACAAAAGCATTTGAAAAGTTACAGCCCTGCGACAGTGCCTGCTTATAGCTTCCGTACTTAAACAGATACTGTTGTTTGCACACACATGCATGCTTAAGTCATTGTTTATATCATTTGCGGTAGATTCTTGTATTTTGTATTACTTTTGGACTGGTCCTGTTAAGTTTGTAATGTTTCAAGAACACCATTTCATTGATGATTATAAATATATTTTGTTTCTGAGAACTAGAAGTCCGTCTAAATGTTGACCTGTAGCTAATCATGAGGATAGTACAAAATGGATTCCTTCAAGTTAGAACTAAGCTGATATTATAGAAAGGTTCCAGTTAGTTTGTTTTAAAGCTGAGCCTCACTCTGCAACCTTTGCTATGTAAAGTATGTTAGTCTGGAACTCCCCTGCCTCTGCCTCTGGAGTGGTGTGATTAAAGAAGTATGCCAGCACATTAGCTGAAAATCAGTATTCAACTAGGAAATTTTCTTTTTGCCTCAATACCTTTGTAGATGCTTGTATTAACAGAACTGAAGAAAGCATACATCGTACAGCGGCAAGGCTGGAGTGCTGATATTTGCAAGTAAAATTAGAAAGGGTCAGCTGTGCTAGTGAGAAACCGACCTGGAAGAAAGACTTCTTCCCTAGCTAGAAGAACTCAGCTATCTAGTCCTGACGCAGACTGGTCCCACTGTGAAGTACATTCATGGTCATGAAGTCTGTAACATTTGCTTGGTTGGAATCCCACATTTCTCAAGAATTTTCTGATTTTTGGATTTTCGAGGCAGAGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTGCTACCACACCCGGCTGAGTTTTCTGATTTTAATTCAGCCAAAAAATATACTTTCCTCTGATGGAATTGGTCATTGCTGACTTATTATAATAACACTAAACCATAAATATGTACTAGACATAAATATTATTATAACATAAATATTACTAAAACAAATATGTAATTATTAATATATACAAAAATGTGTGTGTGTGTATGTGTGTATATGAATCTATGTATATATCCATAACAGCTGTTGGGTTAGTAGTGAATATAGCTTGTAAGTGTTAAACCAGGTTAGGGAGCCTGTGTTGTCAGTCAGGTGAGTTTGTTGTTTTTTGAGATCGTGTCTTACCACATTGCCTGGCCCAGCCTGAACCTCTGATCTTCCTGTTAACCTCTCAAGTGTCTGGAAGCACAGCCATGGCCACCATTCCTGGCTTGGCAAGCTCCTTCGTAGCATGTGTCTTCATTGTACTTGCTGGTGTTCTCCTGGGGCAGTCATTTATGTGTGTAACTCTCTGAGGCTGTGGACTTGGGGATGGTAGCAGGATTGAGTTTGCAGAGTCATTAGATAGAAATTTGCCCATGGAACAAACTCTTCTTTTTCTGCTTCCTTTTCACACTTTGCATGGACATACCCAAGGGATGCCTGCACTTCCACACGTTGAACTTCAGTAACTTAAGTCATTTGTAACTGTTGTGACTACATTTGAGGATCCTTTGCTGAGCATAGACTTCCTTAGGCCTAGAAAGAGAAGGTGCTTCTGACTGCCTGGAGAGATTGTTGGAAAGATGAGAAGTGGCCGTGTAGAATGAGAAGAGGCAAAGAAAGTGAGCTTAACAACACAGTCCTTGCTTGATGGAGTATCTTTTGAGCTCTAGGAAGGCTAAAGAGTGTTGTGTGCTGACTTATACCACAGAAACAAAGAAGAATAAAGTGTGGGATCTCTGTGTGTGGTAACTCTCTGCTGGTTTTTATTTCAG
Seq C2 exon
AGCACAAAGTTATCATTGTTGGGCTGGACAATGCTGGGAAGACGACCATCCTTTACCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036093:ENSMUST00000036541:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(6.4=68.8)
A:
NA
C2:
PF0002516=Arf=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types