RnoEX0011654 @ rn6
Exon Skipping
Gene
ENSRNOG00000005074 | Arl6ip6
Description
ADP ribosylation factor like GTPase 6 interacting protein 6 [Source:RGD Symbol;Acc:1564819]
Coordinates
chr3:38743630-38753195:+
Coord C1 exon
chr3:38743630-38743683
Coord A exon
chr3:38749657-38749778
Coord C2 exon
chr3:38753063-38753195
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTGCCGTGTTCTTACTAGGTA
3' ss Score
10.71
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AATTGCATACAGAAAACTCGAAAAATGAAGATGTCGTAGATACGGGGCTGTTAG
Seq A exon
GTAACATGAAGGTTGATTCTCAGCCTTTATGGTTGCTGATCCCAGACTGGGCTAAGATTCTAGAGCCTGGGAACTGTGCCTGAGTTTTGAAATTGAGGTGCATTCTGGCGACATTTGCTGCA
Seq C2 exon
GATTCTGGTCTCTGCTGATAATATCTCTAACTGCTGGATTATCCTGTTGCAGCTTTTCTTGGACAGTGACTTACTTTGATTCTTTTGAACCAGGAATGTTTCCGCCTACTCCTCTTTCACCTGCTAGGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005074_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150621=ARL6IP6=PU(18.2=73.7)
A:
NO
C2:
PF150621=ARL6IP6=FE(57.1=100)
Main Inclusion Isoform:
ENSRNOT00000006774fB1439
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATACAGAAAACTCGAAAAATGA
R:
CCTAGCAGGTGAAAGAGGAGT
Band lengths:
179-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]