RnoEX0012524 @ rn6
Exon Skipping
Gene
ENSRNOG00000001597 | Atf2
Description
activating transcription factor 2 [Source:RGD Symbol;Acc:621862]
Coordinates
chr3:60726716-60732332:-
Coord C1 exon
chr3:60732126-60732332
Coord A exon
chr3:60728862-60729002
Coord C2 exon
chr3:60726716-60726821
Length
141 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTCTCATCTGGGCAGATG
3' ss Score
10.02
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCGTCTCCAGCTCACACAACTCCACAGACCCAAAATACAAGTGGCCGTCGAAGAAGAGCAGCTAATGAAGATCCTGATGAGAAAAGGAGGAAGTTTCTAGAACGAAATAGAGCAGCAGCTTCAAGATGCCGTCAAAAAAGGAAAGTATGGGTTCAGTCCTTAGAGAAGAAAGCAGAAGACTTGAGCTCACTAAATGGCCAGCTGCAG
Seq A exon
ATGAAGATTTCTTCCAAGAACCAAAGACCACCTAACAAAGCCTCCAATACCAGACATGTGATACTCTTTTTAGTTGTTGTCCAAGAGACTCACAAAACATAGTCTATTACTGTTGCCCTTGATAACCCCCAGAGGTAGAAG
Seq C2 exon
AGCGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAGTCTGGCTATCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001597-'30-30,'30-29,31-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=0.788 C2=0.757
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.8=66.7)
A:
PF0017016=bZIP_1=PD(25.0=47.1)
C2:
PF0017016=bZIP_1=PD(26.2=47.2)
Main Inclusion Isoform:
ENSRNOT00000002174fB1621
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAGCTCACACAACTCCA
R:
TGTTTCAGCTGTGCCACTTCA
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]