MmuEX0006576 @ mm10
Exon Skipping
Gene
ENSMUSG00000027104 | Atf2
Description
activating transcription factor 2 [Source:MGI Symbol;Acc:MGI:109349]
Coordinates
chr2:73823201-73828678:-
Coord C1 exon
chr2:73828472-73828678
Coord A exon
chr2:73825259-73825403
Coord C2 exon
chr2:73823201-73823306
Length
145 bp
Sequences
Splice sites
3' ss Seq
AACCTTTCTCATCTGGGCAGACG
3' ss Score
7.04
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCTTCTCCAGCTCACACAACTCCTCAGACCCAAAATACAAGTGGCCGTCGAAGAAGAGCAGCTAATGAAGATCCTGATGAGAAAAGGAGGAAGTTTCTAGAACGAAATAGAGCAGCAGCTTCAAGATGCCGACAAAAAAGGAAAGTGTGGGTTCAGTCCTTAGAGAAGAAAGCAGAAGACTTGAGTTCACTAAATGGCCAGCTGCAG
Seq A exon
ACGAAGCTTCTTCCAAGAGCCAAAGACCACCTAACAAAACCTCCAATGCCAGACATGAGATACTCTCTTTTTAGTTGTTGTCCAAGAGACTCACAAAACATACAATCTATTGCTGTTGCCCTTGATAAGCCCCCAGAGGTAGAAG
Seq C2 exon
AGCGAAGTCACCCTGCTGAGAAATGAAGTGGCCCAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACTGCCATGCAGAAGAAGTCTGGCTATCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027104_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=0.837 C2=0.703
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.8=66.7)
A:
PF0771610=bZIP_2=PD(9.6=10.2)
C2:
PF0017016=bZIP_1=PD(26.2=47.2)
Main Inclusion Isoform:
ENSMUST00000055833fB570
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCTCACACAACTCCTCA
R:
TCAGCTGGGCCACTTCATTTC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types