MmuEX0006578 @ mm10
Exon Skipping
Gene
ENSMUSG00000027104 | Atf2
Description
activating transcription factor 2 [Source:MGI Symbol;Acc:MGI:109349]
Coordinates
chr2:73816509-73828678:-
Coord C1 exon
chr2:73828472-73828678
Coord A exon
chr2:73823201-73823306
Coord C2 exon
chr2:73816509-73819148
Length
106 bp
Sequences
Splice sites
3' ss Seq
GTGAGTTGTTTCTTCTCCAGAGC
3' ss Score
7.32
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GCTTCTCCAGCTCACACAACTCCTCAGACCCAAAATACAAGTGGCCGTCGAAGAAGAGCAGCTAATGAAGATCCTGATGAGAAAAGGAGGAAGTTTCTAGAACGAAATAGAGCAGCAGCTTCAAGATGCCGACAAAAAAGGAAAGTGTGGGTTCAGTCCTTAGAGAAGAAAGCAGAAGACTTGAGTTCACTAAATGGCCAGCTGCAG
Seq A exon
AGCGAAGTCACCCTGCTGAGAAATGAAGTGGCCCAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACTGCCATGCAGAAGAAGTCTGGCTATCATA
Seq C2 exon
CTGCTGATAAAGATGACAGTTCAGAAGACCTTTCTGTGCCAAGCAGTCCACATACAGAAGCGATCCAGCACAGCTCTGTCAGCACATCCAATGGAGTCAGTTCAACATCAAAAGCAGAAGCTGTAGCCACTTCAGTCCTCACCCAGATGGCGGACCAGAGCACGGAGCCTGCACTTTCACAGATTGTCATGGCTCCTCCCTCCCAGGCACAGCCCTCAGGAAGTTGATTAAAACCTGCAGTGCAACAGTTTTAGATACTGATTAGTGACTTCAAAGGGAAATCAAGGAAAGACCAGTTTGCATTTATGCGAAATCTGTGGTTGTAAATTTTTTTTTTTTTACTTGAAGTTAAATTTGTCTCTGGAGTTGGTATAGCAGCAGTTGATGATCAGACTGAATATGTTTTTAGTCTCTGGAAGACTGATTTTCCTTTTTTATACATATTGTTAAGATTTATTAATTTTCCTGTGCTCAATGTGTAAATTGTATCATAACTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027104_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=0.703 C2=0.963
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.8=66.7)
A:
PF0017016=bZIP_1=PD(26.2=47.2)
C2:
PF0017016=bZIP_1=PD(17.5=23.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCTCACACAACTCCTCA
R:
TGGACTGCTTGGCACAGAAAG
Band lengths:
252-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types