GgaEX1009617 @ galGal4
Exon Skipping
Gene
ENSGALG00000009287 | ATF2
Description
Cyclic AMP-dependent transcription factor ATF-2 [Source:UniProtKB/Swiss-Prot;Acc:O93602]
Coordinates
chr7:16190328-16203477:+
Coord C1 exon
chr7:16190328-16190534
Coord A exon
chr7:16196930-16197035
Coord C2 exon
chr7:16203296-16203477
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATAACTTTCTTCTCCTTTAGAAT
3' ss Score
10.52
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GCATCACCAGCTCAGCCTACACAACAAACACCAAATACAGGTGGTCGGCGAAGAAGAGCTGCTAATGAAGACCCTGATGAAAAACGAAGGAAGTTTCTTGAGCGAAACCGAGCTGCTGCTTCCAGATGCCGACAGAAACGGAAGGTCTGGGTACAGTCATTGGAGAAGAAGGCTGAAGACCTGAGCTCGCTAAATGGCCAGTTACAG
Seq A exon
AATGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAATCTGGCTATCATA
Seq C2 exon
CTGCAGATAAAGATGACAGTTCAGAAGACATCTCAGTGCCAAGCAGCCCACACACGGAAGCTATTCAGCACAGCTCCGTCAGCACTTCCAACGGTGTAAGCTCCACTTCCAAGGCAGAGGCGGTGGCCACCTCAGTGCTCACGCAGCTGGCGGACCAGAGCTCGGAGCCCGGGCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287-'24-38,'24-33,29-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=0.729 C2=1.000
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.8=66.7)
A:
PF0017016=bZIP_1=PD(26.2=47.2)
C2:
NO
Main Skipping Isoform:
ENSGALT00000033263fB5219
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATACAGGTGGTCGGCGAA
R:
GAATAGCTTCCGTGTGTGGGC
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]