RnoEX0012527 @ rn6
Exon Skipping
Gene
ENSRNOG00000001597 | Atf2
Description
activating transcription factor 2 [Source:RGD Symbol;Acc:621862]
Coordinates
chr3:60721135-60732332:-
Coord C1 exon
chr3:60732126-60732332
Coord A exon
chr3:60726716-60726821
Coord C2 exon
chr3:60721135-60721409
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATGAGTTGTTTCTTCTCCAGAGC
3' ss Score
7.58
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GCGTCTCCAGCTCACACAACTCCACAGACCCAAAATACAAGTGGCCGTCGAAGAAGAGCAGCTAATGAAGATCCTGATGAGAAAAGGAGGAAGTTTCTAGAACGAAATAGAGCAGCAGCTTCAAGATGCCGTCAAAAAAGGAAAGTATGGGTTCAGTCCTTAGAGAAGAAAGCAGAAGACTTGAGCTCACTAAATGGCCAGCTGCAG
Seq A exon
AGCGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAGTCTGGCTATCATA
Seq C2 exon
CTGCTGATAAAGATGACAGCTCAGAAGACCTTTCCGTGCCAAGCAGCCCACATACAGAAGCGATCCAGCACAGCTCTGTCAGTACGTCCAATGGAGTCAGTTCAACATCAAAAACAGAAGCTGGAGCCACTTCAGTCCTCACCCAGATGGCGGACCAGAGCACCGAGCCTGCACTTTCACAGATTGTCATGGCTCCTTCCTCCCAGGCACAGCCCTCAGGAAGTTGATTAAAACCTGCAGTGCAACAGGTTTAGATACTGATTAGTGACTTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001597_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=0.757 C2=1.000
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.8=66.7)
A:
PF0017016=bZIP_1=PD(26.2=47.2)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000002174fB1621
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAGCTCACACAACTCCA
R:
GGCACGGAAAGGTCTTCTGAG
Band lengths:
244-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]