BtaEX0004677 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21813465-21830229:+
Coord C1 exon
chr2:21813465-21813671
Coord A exon
chr2:21825530-21825635
Coord C2 exon
chr2:21830003-21830229
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATAAGTTGTTTCCCCTCCAGAGT
3' ss Score
6.88
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GCTTCTCCAGCTCACACAACTCCACAGACCCAAAATACAACTGGTCGTCGAAGAAGAGCAGCTAATGAAGATCCCGATGAAAAAAGGAGGAAGTTTCTGGAAAGAAATAGAGCAGCAGCTTCAAGATGCCGACAAAAGAGAAAAGTCTGGGTTCAGTCTTTAGAGAAGAAAGCAGAAGACTTGAGTTCATTAAATGGTCAACTGCAG
Seq A exon
AGTGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAATCTGGCTATCATA
Seq C2 exon
CTGCTGATAAAGACGATAGTTCAGAAGATTTGTCAGTGCCGAGTAGTCCACATACCGAAGCTATACAACATAGTTCTGTCAGCACATCCAATGGAGTCAGTTCAACTTCCAAGGCAGAAGCTGTAGCCACTTCAGTCCTCACCCAGATGGCGGACCAGAGTACAGAGCCTGTGCTTTCGCAGATTGTCATGGCTCCTTCCTCCCAGTCACAGCCCTCAGGAAGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295_MULTIEX2-4/4=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=0.694 C2=0.987
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.8=66.7)
A:
PF0017016=bZIP_1=PD(26.2=47.2)
C2:
NO
Main Skipping Isoform:
ENSBTAT00000002963fB821
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAGCTCACACAACTCCA
R:
TGGACTACTCGGCACTGACAA
Band lengths:
254-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development