HsaEX6016818 @ hg19
Exon Skipping
Gene
ENSG00000115966 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:784]
Coordinates
chr2:175936978-175957344:-
Coord C1 exon
chr2:175957271-175957344
Coord A exon
chr2:175945388-175945493
Coord C2 exon
chr2:175936978-175939563
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATAAGTTGTTTCTTCTCCAGAGT
3' ss Score
6.57
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TGAATATATTGCTCGTGAAAGGTGCCAGATTGACAGCTTTGGAAACTGAAGGACTCTAATTATCCACAGACCAG
Seq A exon
AGTGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAATCTGGCTATCATA
Seq C2 exon
CTGCTGATAAAGATGATAGTTCAGAAGACATTTCAGTGCCGAGTAGTCCACATACAGAAGCTATACAGCATAGTTCGGTCAGCACATCCAATGGAGTCAGTTCAACCTCCAAGGCAGAAGCTGTAGCCACTTCAGTCCTCACCCAGATGGCGGACCAGAGTACAGAGCCTGCTCTTTCACAGATCGTTATGGCTCCTTCCTCCCAGTCACAGCCCTCAGGAAGTTGATTAAAAACCTGCAGTACAACAGTTTTAGATACTCATTAGTGACTTCAAAGGGAAATCAAGGAAAGACCAGTTTCCATTTATGCGAAATCTGTGGTTGTAAATTTTTTTTTTTTACTTGAAATTAAATTTGGCTCTAAAGTTGGTGTAGCAGCAGTTGATCAGACTGAAAAACGGTTTTTAGTCTCTGGAAAAAGACTGATTTTGCTTTTTTTATAAATATTATTAGATTTATTAATTTTTCTGTGCTCAATGTGTAAATTGTATTATAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115966-'20-29,'20-25,21-29=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.519 C2=0.981
Domain overlap (PFAM):
C1:
NO
A:
PF0017016=bZIP_1=PD(26.2=47.2)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGTGAAAGGTGCCAGATT
R:
ACGATCTGTGAAAGAGCAGGC
Band lengths:
251-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)