RnoEX0012772 @ rn6
Exon Skipping
Gene
ENSRNOG00000006523 | Atl2
Description
atlastin GTPase 2 [Source:RGD Symbol;Acc:1305125]
Coordinates
chr6:2597617-2599315:+
Coord C1 exon
chr6:2597617-2597667
Coord A exon
chr6:2597948-2597994
Coord C2 exon
chr6:2599223-2599315
Length
47 bp
Sequences
Splice sites
3' ss Seq
TGGTCTGTAGTTATTTACAGAGT
3' ss Score
1.77
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTATATAATTTGTCTCAGAATATTCAAGAAGATGATCTTCAACACTTACAA
Seq A exon
AGTATGGGAGACTTGCAATGGAAGAGATCTACCAGAAGCCATTTCAG
Seq C2 exon
ACGTTAATGTTTTTGATTCGAGATTGGAGTTATCCTTATGAGCATTCATATGGCTTGGAAGGTGGAAAGCAGTTCCTGGAAAAGAGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006523-'13-7,'13-6,14-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.9=100)
A:
PF0226314=GBP=FE(6.6=100)
C2:
PF0226314=GBP=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]