HsaEX6012996 @ hg19
Exon Skipping
Gene
ENSG00000119787 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:24047]
Coordinates
chr2:38540293-38542476:-
Coord C1 exon
chr2:38542426-38542476
Coord A exon
chr2:38541750-38541806
Coord C2 exon
chr2:38540293-38540385
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAACTAACTCTATTTAATAGTTA
3' ss Score
3.71
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTATATAATCTGTCTCAGAATATTCAAGAAGATGATCTTCAACATTTGCAA
Seq A exon
TTATTTACAGAGTATGGAAGACTTGCGATGGAAGAAATCTACCAGAAACCATTTCAG
Seq C2 exon
ACATTAATGTTTTTGATTCGAGATTGGAGCTATCCTTATGAACATTCATATGGTTTGGAAGGTGGAAAGCAATTTCTTGAAAAGAGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119787-'14-13,'14-11,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(0.1=0.0),PF0226314=GBP=FE(11.9=100)
A:
PF0226314=GBP=FE(10.6=100)
C2:
PF0226314=GBP=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)