HsaEX6012996 @ hg38
Exon Skipping
Gene
ENSG00000119787 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr2:38310309-38315334:-
Coord C1 exon
chr2:38315284-38315334
Coord A exon
chr2:38314608-38314664
Coord C2 exon
chr2:38310309-38310447
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAACTAACTCTATTTAATAGTTA
3' ss Score
3.71
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTATATAATCTGTCTCAGAATATTCAAGAAGATGATCTTCAACATTTGCAA
Seq A exon
TTATTTACAGAGTATGGAAGACTTGCGATGGAAGAAATCTACCAGAAACCATTTCAG
Seq C2 exon
GTAAAACAAAATCAACATGAAGAGCTTCAGAATGTAAGGAAGCACATACACAATTGTTTCTCAAATCTTGGTTGCTTCCTTTTGCCACATCCTGGTCTTAAAGTTGCAACTAATCCTAGTTTTGATGGGAGATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119787_MULTIEX2-1/3=C1-3
Average complexity
C2*
Mappability confidence:
75%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(0.1=0.0),PF0226314=GBP=FE(11.9=100)
A:
PF0226314=GBP=FE(11.3=100)
C2:
PF0226314=GBP=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains