GgaEX1009729 @ galGal4
Exon Skipping
Gene
ENSGALG00000008515 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr3:15781622-15784878:-
Coord C1 exon
chr3:15784828-15784878
Coord A exon
chr3:15782619-15782675
Coord C2 exon
chr3:15781622-15781714
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTTACACTCTTTCTATCAGTTG
3' ss Score
7.53
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTATACAACTTGTCCCAGAATATTCAGGAAGATGACCTTCAACATTTGCAG
Seq A exon
TTGTTTACAGAATATGGAAGACTAGCTATGGAAGAAATTTACCAAAAGCCGTTTCAA
Seq C2 exon
ACACTGATGTTCTTAATTAGAGATTGGAGTTACCCTTATGAACATGCGTATGGCTTGGAAGGAGGAAAAAAATTCCTGGAGAAAAGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.9=100)
A:
PF0226314=GBP=FE(6.6=100)
C2:
PF0226314=GBP=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTTGTCCCAGAATATTCAGGA
R:
CTGCAATCTTTTCTCCAGGAATT
Band lengths:
140-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]